Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq601 98.7 8e-16 seq5308 95.1 9e-15 seq4732 87.8 1e-12 >seq601 Length=1931879 Score = 98.7 bits (108), Expect = 8e-16 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 108862 AACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTC 108921 ||||| ||||| | || || | ||||||||||||||||||||||||||||||| ||| Sbjct 440515 AACAAGCTGGTGTCCACGCTGACCATCGGCGAGGGATGGCACAACTACCACCACGTCTTC 440574 Query 108922 CCCTACGACTACAAGGCCGCCGAGTTGGG 108950 |||| ||||||||||| |||||| |||| Sbjct 440575 CCCTGGGACTACAAGGCAGCCGAGCTGGG 440603 Score = 95.1 bits (104), Expect = 9e-15 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 ||||| || || ||||| ||||| | ||||| ||||||||||||| ||| | | Sbjct 439428 ACGGCGGGAGTGCATCGCCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCGCTGCGC 439487 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 | ||||| ||| ||| ||| |||| ||||||| |||| | ||||| | | Sbjct 439488 ATCTTCCTCATGCTGTGCCAGTCGCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGC 439547 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGC-CAACAG 108533 || ||| | || |||||||||| | | ||||| ||||| || |||||| | | || | Sbjct 439548 GACCACCGCGTCCACCACAAGTTCACCGACACACACGCCGATCCCCACAACTCGCGAC-G 439606 Query 108534 GGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 || |||| ||| | ||| |||| ||||| ||| | ||| ||||||| |||| Sbjct 439607 CGGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCCGATGTGA 439662 >seq5308 Length=4737781 Score = 95.1 bits (104), Expect = 9e-15 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 108853 CCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCAC 108912 || || || |||| | ||| || |||||| | |||||||||||||||||||||||| Sbjct 2308702 CCCAGCGAGAACATCTACGTGTCGCTGTTGGCCATGGGCGAGGGATGGCACAACTACCAC 2308643 Query 108913 CACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAACGAC 108957 ||||| ||||||| |||||||| || |||||| |||| ||| || Sbjct 2308642 CACGTCTTCCCCTGGGACTACAAAGCAGCCGAGCTGGGCAACTAC 2308598 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 ||||||||| | | ||||| | || ||| | ||||||||||| || || || ||| Sbjct 2309733 CAGAACACCCTGTACGACTGGGTTCGTGACCACCGAGTTCACCACAAATATTCGGAGACG 2309674 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 || || || ||||| ||||||||||| || | ||||| |||||||| ||||| ||| Sbjct 2309673 GATGCGGATCCTCACAATGCCAACAGGGGATTTTTCTTCTCCCACGTGGGCTGGCTGATG 2309614 Query 108568 ATGACCAAGGACCCCGACGTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATA 108626 ||| || | || || ||| | ||| | |||||| | || ||||||| ||||| Sbjct 2309613 ATGCTGAAACATCCGGATGTGCT-TCGTCGCGGTCGCCAGATCGACATGAGCGACATTCT 2309555 Query 108627 CTCCGATCCGGTGGTAGTGTGGCACACCAAGTACTTTATTCCTCTTAA 108674 | ||||| ||||| | ||| || |||||||| || || || Sbjct 2309554 GGCAGATCCCGTGGTGCGATTCCACCAGAAATACTTTATCCCCCTGAA 2309507 >seq4732 Length=31188 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| |||||||||||||||| |||||||||||||| ||||||| ||||||||| | | Sbjct 24397 TGGCCTTCGGCGAGGGATGGCATAACTACCACCACGTATTCCCCTGGGACTACAAGACGG 24338 Query 108941 CCGAGTTGGGGAACGACT---TTAATTTCACC 108969 ||||||| || || ||| | || |||||| Sbjct 24337 CCGAGTTCGGCAAATACTCGCTAAACTTCACC 24306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381747539644776