Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_011335.1
Length=119343
Score E
Sequences producing significant alignments: (Bits) Value
seq601 98.7 8e-16
seq5308 95.1 9e-15
seq4732 87.8 1e-12
>seq601
Length=1931879
Score = 98.7 bits (108), Expect = 8e-16
Identities = 75/89 (84%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 108862 AACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTC 108921
||||| ||||| | || || | ||||||||||||||||||||||||||||||| |||
Sbjct 440515 AACAAGCTGGTGTCCACGCTGACCATCGGCGAGGGATGGCACAACTACCACCACGTCTTC 440574
Query 108922 CCCTACGACTACAAGGCCGCCGAGTTGGG 108950
|||| ||||||||||| |||||| ||||
Sbjct 440575 CCCTGGGACTACAAGGCAGCCGAGCTGGG 440603
Score = 95.1 bits (104), Expect = 9e-15
Identities = 164/236 (69%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414
||||| || || ||||| ||||| | ||||| ||||||||||||| ||| | |
Sbjct 439428 ACGGCGGGAGTGCATCGCCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCGCTGCGC 439487
Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474
| ||||| ||| ||| ||| |||| ||||||| |||| | ||||| | |
Sbjct 439488 ATCTTCCTCATGCTGTGCCAGTCGCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGC 439547
Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGC-CAACAG 108533
|| ||| | || |||||||||| | | ||||| ||||| || |||||| | | || |
Sbjct 439548 GACCACCGCGTCCACCACAAGTTCACCGACACACACGCCGATCCCCACAACTCGCGAC-G 439606
Query 108534 GGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589
|| |||| ||| | ||| |||| ||||| ||| | ||| ||||||| ||||
Sbjct 439607 CGGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCCGATGTGA 439662
>seq5308
Length=4737781
Score = 95.1 bits (104), Expect = 9e-15
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 108853 CCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCAC 108912
|| || || |||| | ||| || |||||| | ||||||||||||||||||||||||
Sbjct 2308702 CCCAGCGAGAACATCTACGTGTCGCTGTTGGCCATGGGCGAGGGATGGCACAACTACCAC 2308643
Query 108913 CACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAACGAC 108957
||||| ||||||| |||||||| || |||||| |||| ||| ||
Sbjct 2308642 CACGTCTTCCCCTGGGACTACAAAGCAGCCGAGCTGGGCAACTAC 2308598
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507
||||||||| | | ||||| | || ||| | ||||||||||| || || || |||
Sbjct 2309733 CAGAACACCCTGTACGACTGGGTTCGTGACCACCGAGTTCACCACAAATATTCGGAGACG 2309674
Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567
|| || || ||||| ||||||||||| || | ||||| |||||||| ||||| |||
Sbjct 2309673 GATGCGGATCCTCACAATGCCAACAGGGGATTTTTCTTCTCCCACGTGGGCTGGCTGATG 2309614
Query 108568 ATGACCAAGGACCCCGACGTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATA 108626
||| || | || || ||| | ||| | |||||| | || ||||||| |||||
Sbjct 2309613 ATGCTGAAACATCCGGATGTGCT-TCGTCGCGGTCGCCAGATCGACATGAGCGACATTCT 2309555
Query 108627 CTCCGATCCGGTGGTAGTGTGGCACACCAAGTACTTTATTCCTCTTAA 108674
| ||||| ||||| | ||| || |||||||| || || ||
Sbjct 2309554 GGCAGATCCCGTGGTGCGATTCCACCAGAAATACTTTATCCCCCTGAA 2309507
>seq4732
Length=31188
Score = 87.8 bits (96), Expect = 1e-12
Identities = 75/92 (82%), Gaps = 3/92 (3%)
Strand=Plus/Minus
Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940
|||| |||||||||||||||| |||||||||||||| ||||||| ||||||||| | |
Sbjct 24397 TGGCCTTCGGCGAGGGATGGCATAACTACCACCACGTATTCCCCTGGGACTACAAGACGG 24338
Query 108941 CCGAGTTGGGGAACGACT---TTAATTTCACC 108969
||||||| || || ||| | || ||||||
Sbjct 24337 CCGAGTTCGGCAAATACTCGCTAAACTTCACC 24306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381747539644776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |