Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq5277 113 3e-20 seq4172 98.7 7e-16 >seq5277 Length=7425378 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| | | ||| || ||||||||||| || || || |||||||| ||| Sbjct 1193466 CCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 1193407 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| || ||||| || ||| | || | |||||| || || ||| Sbjct 1193406 AGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGA 1193347 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| |||||| || || | || || ||||| | ||| || Sbjct 1193346 ATTCCCTCCTTGTCCTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACC 1193287 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||||||||| || || || ||||| || |||||||| Sbjct 1193286 TCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 100 bits (110), Expect = 2e-16 Identities = 164/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | | ||| || |||||||| || ||||| || |||||||||||| Sbjct 1193012 TGCCACCACGGAGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGG 1192953 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | ||||| | || ||||| || | |||| ||||| || || | Sbjct 1192952 AAAGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGG 1192893 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| || |||||||| ||| ||| || ||| | || || |||||| | || | Sbjct 1192892 GAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGA 1192833 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 | || || |||||||| || || |||| || || ||||| || ||||| ||||| Sbjct 1192832 CCTCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT-TTTGA 1192779 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||||||| ||| | | |||| || Sbjct 1194360 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCCTCC 1194301 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || || ||||| || | ||||||||||| ||||| |||||||| |||||||| Sbjct 1194300 AACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 1194241 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| || ||| | || || || || || || || | |||||||| || Sbjct 1194240 ATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACCTCCAGTGTAATGGTCTTG 1194181 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || || |||||||| Sbjct 1194180 CCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152 >seq4172 Length=1033301 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || ||||| |||||| | | | | |||| || Sbjct 907442 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGACAAAGTACGTCCGTCCTCC 907501 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || ||| | ||||||||||| || || |||||||| |||||||| Sbjct 907502 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 907561 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | || || |||||| | || || || || || ||||| || Sbjct 907562 ATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTG 907621 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || |||| ||| || || |||||||||||||| Sbjct 907622 CCAGTCAAAGTCTTCACGAAAATTTGCATATT 907653 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| |||| | | || ||||| | || || || || || |||||||| ||| Sbjct 906739 GCCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 906798 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | | | || || | || || || ||| | ||||||||||| || || || Sbjct 906799 CAGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 906858 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||||| || ||| || ||| | || || |||||| | || || Sbjct 906859 GATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGAC 906918 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| ||||| || ||||| || ||||| Sbjct 906919 CTCCAAAGTGATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 906966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357368352823265