Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5214 259 4e-64 seq5277 93.3 4e-14 seq4488 91.5 1e-13 seq4172 82.4 7e-11 >seq5214 Length=3698012 Score = 259 bits (286), Expect = 4e-64 Identities = 1143/1796 (64%), Gaps = 40/1796 (2%) Strand=Plus/Minus Query 122897 AAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACG 122956 |||| ||||||| ||| || || ||||| |||||||| || || || | || ||| Sbjct 3421979 AAAGATCGCCGAGCGTCCGCAGCACATGCTGATGCGCGTGGCGATCGGAATCCATGGAGA 3421920 Query 122957 CGACATCGAAAACGCGACCG---AAACTTACGATTTGATGTCTCAAAAATTTTTCACGCA 123013 |||||||| ||| ||| | || ||| | || |||| | || ||||| || Sbjct 3421919 GGACATCGAT---GCGGCCGTGGAGACCTACAACCTGCTGTCGGAGCGGTTCTTCACCCA 3421863 Query 123014 CGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTT 123073 ||| || || | || ||||| | ||| || ||| || |||| ||||| || | Sbjct 3421862 CGCCTCGCCAACGCTTTTTGCCGCAGCCACAAATCGGCCGCAACTGTCGTCGTGCTTCCT 3421803 Query 123074 GCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTT 123133 ||| ||| || | ||| ||| || |||| | | || | ||||| | Sbjct 3421802 GCTGACCATGACGGCCGACTCGATCGAGGGCATCTTCAAGTCGGTGGAACAGTGCGCCAT 3421743 Query 123134 GATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAG 123193 ||| || |||| | || ||||| || |||| || || | | | | | || | Sbjct 3421742 GATCTCGAAATCGGCAGGAGGCATTGGACTGAATGTCCATTGCATCCGGGCCAAGGGCAC 3421683 Query 123194 CCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAA 123253 | |||| | |||| | || | | || || || | | ||||||| | || | ||| Sbjct 3421682 CTCCATCTGCGGCACGAATGGCACCTCCAATGGCCTGGTACCCATGCTCAGGGTCTTCAA 3421623 Query 123254 TAACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATCTA 123310 || | | || |||| || ||||| |||||| || || || | || || || Sbjct 3421622 CAATGTGGCACGTTACGTGGATCAGGGTGGCGGCAAGCGGCCCGGTGCCTTCGCCATTTA 3421563 Query 123311 TCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTA-AATTTAAAACGCAACATGGGGG 123369 || || || |||||| || |||| ||| || | || | || | | |||| || Sbjct 3421562 CCTGGAGCCCTGGCACTCGGACGTGTTCGAGTTCCTGGAACTCAAGAAG-AACACCGGCA 3421504 Query 123370 CGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGC 123429 ||| || || ||||||||| | || ||||| | ||| |||||||| | || ||| Sbjct 3421503 AGGAGGAGAATCGCGCCCGCGATCTCTTCTACGCCCTCTGGATACCCGATCTTTTCATGA 3421444 Query 123430 GACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGA 123489 |||||| | | | |||| | |||||||| |||||||| | || |||||| || Sbjct 3421443 AACGCGTCGAGGCCAACGGGGACTGGTCGCTGATGTGTCCGCACAAATGCCCCGGCCTGC 3421384 Query 123490 GCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA--- 123546 ||| || | ||| || |||| || || ||||| |||||||||||| || ||| Sbjct 3421383 ACGATGTGTGGGGCGATGAGTTCGAAAAGCTGTACACGCAATACGAGCAGGAGGGCCGTG 3421324 Query 123547 --AACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGT 123604 ||| || |||| | | | | || | |||| | ||| || | || || Sbjct 3421323 CGAACCGGACGGTCAAGGCACAGTCCTTG--TGGTTCGCCATCATT---GAGTCGCAGGT 3421269 Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 |||||||| | ||||||||||| | ||| || | ||||||||||| | ||| ||| Sbjct 3421268 GGAAACCGGCAATCCGTACATGCTGTTCAAGGATTCGTGCAACAGGAAGAGCAACCAGCA 3421209 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGC 123724 || | || || || || || || ||| | ||| ||||||| | || || || || Sbjct 3421208 GAATGTTGGCACCATCAAGTGCAGCAATTTGTGCACCGAAATCGTTGAGTATTCCGC-GC 3421150 Query 123725 CGATCAAG-TGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA-----TCGTTGCGTCGA 123778 || | || | || ||||| || |||| || ||| | | || |||| || | Sbjct 3421149 CGGACGAGATTGCAGTGTGCAACCTGGCATCCATTGCCCTCAACATGTTCGTCACGCCCG 3421090 Query 123779 AAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTT 123838 | | | || | | ||||| ||| || || | || || || || | ||| | Sbjct 3421089 AGAAGACG--TATGATTTCAAAAAACTGAAGGAAGTCACCAAGACGGTTACCAGAAATCT 3421032 Query 123839 GAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAA 123898 ||||| || || || | || |||||||| || || | |||||||||| Sbjct 3421031 CAACAAGATAATTGACATCAACTTTTATCCCCTGCCAGAGACAAAGAAATCTAATTTGAG 3420972 Query 123899 ACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCAT 123958 || | ||||| || | || | || || || || ||||| | | | |||| | Sbjct 3420971 GCATCGTCCGGTGGGCATCGGTGTCCAGGGTTTCGCTGACGCCCTGATTCTCATGCGATT 3420912 Query 123959 GCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTA 124018 || ||||||||||| ||||| | | ||| ||| ||| |||||| ||||| || Sbjct 3420911 CCCATACGAAAGCGAGGAAGCCGGTCTTTTGAATCAGCAGATATTCGAAACCATTTACTA 3420852 Query 124019 CGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGC 124078 |||||| ||||| || ||||| || || ||| | | | || | || |||| |||| Sbjct 3420851 CGGCGCCTTGGAAGCCAGCTGTGAGCTGGCGCAGGTCGAAGGTCCCTATGAAACCTACGA 3420792 Query 124079 GGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAA 124138 ||||||||| | |||| || ||| ||||||||||||||||| | | || || | Sbjct 3420791 GGGCAGCCCCGTGAGCAAGGGAATTCTGCAGTACGACATGTGGGACAAGAAGCCCACGGA 3420732 Query 124139 TTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCT 124198 ||||||| ||| | || | ||| | ||||||| | | ||||| || Sbjct 3420731 CCTGTGGGATTGGCAGAAACTGAAGGAGTCCATCAAGCAGCACGGTGTCAGGAACTCCCT 3420672 Query 124199 GTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTT 124258 | |||| || |||||| |||||| ||||||| ||||| | || ||||||||||| || Sbjct 3420671 GCTGGTTGCACCCATGCCCACGGCATCCACTGCCCAAATAATGGGCAACAACGAATCTTT 3420612 Query 124259 CGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGAT 124318 |||||| | ||| | || | ||| || || || | |||| || || || ||| | Sbjct 3420611 CGAGCCCTACACAACTAACATTTACACCCGGCGCGTTCTGTCCGGTGAATTCCAGGTGGT 3420552 Query 124319 AAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCGCAA 124378 || ||||||||| || ||||| | | | |||||| || || | ||| || Sbjct 3420551 CAACCATCATTTGTTGAGGGACTTAACCGAGCTGGATTTGTGGGACGACGATATGAAGAA 3420492 Query 124379 CGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGTCAA 124438 | | || ||| | | | || | ||| ||| | | ||||| | | || Sbjct 3420491 CCAGATCATTTCCAGCAGGGGTTCAATCCAGAACATTGAGGCCATTCCCCAGAAGGTTCG 3420432 Query 124439 GCAACTGTACAAAACCGTGTGGGAAAT----GAAAAATAAACGATTAATTGAAATGGCCG 124494 | || ||||| |||||||||||||| | || | || |||| ||||||||| Sbjct 3420431 CGATCTTTACAAGACCGTGTGGGAAATCTCCGTGAAGTCCAC----AATTAAAATGGCCG 3420376 Query 124495 TCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCA 124554 || || || |||| || || |||||||| || || ||| | ||| || || || | Sbjct 3420375 CAGATCGTGGTGCGTTCATCGACCAAAGTCAGTCGTTCAACATTCATGTGGCAGAGCCGA 3420316 Query 124555 CCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGC-GGACTCAAAACGGGC 124613 ||||| | |||| ||| ||| | || | |||| ||| || ||||| || ||| Sbjct 3420315 ACTACGGCAAACTGACGTCCATTCACTTTTACTCCTGGA-AAGCTGGCCTCAAGACCGGC 3420257 Query 124614 ATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAA 124669 ||||| || | | || || || || || | || ||||| || ||||| || || Sbjct 3420256 ATGTACTATCTGCGCACAAAGCCAGCTGCGAACGCGATTCAGTTCACCGTGGATAA 3420201 >seq5277 Length=7425378 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||||||||| || | | ||| | || || || |||||||| ||||| || |||||| Sbjct 1194381 ATTCCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCG 1194322 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | || ||||| || || || || | ||||| || |||||||| | Sbjct 1194321 --GACAGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTG 1194264 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || || || || || ||||| || | || | |||||| || | || Sbjct 1194263 GGGGAATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCT 1194204 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || |||| || ||||| ||||| || || || || |||||||| Sbjct 1194203 CCACCTCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || ||| | || | ||| ||||| ||| Sbjct 1193442 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAACTGT 1193383 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||||||| | || | || ||||| || || ||||| || || || || |||||||| Sbjct 1193382 TTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATTTTA 1193323 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || | ||| || |||| || || || ||||| | ||||| ||||| Sbjct 1193322 GCCTTCA-CGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTACCGGT 1193264 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || |||||||| Sbjct 1193263 AAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || ||| | |||| ||| || | || Sbjct 1193670 TGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCCTCAAGCTGC 1193611 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | |||||||| ||||| || || |||||||| || || || ||||| || Sbjct 1193610 TTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTG 1193551 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | ||| || |||| || || || ||||| | ||||| |||||| Sbjct 1193550 GCCTTCACATTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTTCCGGTT 1193491 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | || || || || |||||||| Sbjct 1193490 AAGGTCTTCACGAAGATTTGCAT 1193468 >seq4488 Length=533506 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| ||||| || || || ||||| ||||| || || || Sbjct 135534 ATGCCACCGCGCAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 135475 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| || || || ||| | |||| || ||||| || || Sbjct 135474 GACAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 135415 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || ||||| || || | || | ||||||||||| ||| Sbjct 135414 GGAATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCC 135355 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | || |||||||| || ||||| ||||| || ||||| Sbjct 135354 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305 >seq4172 Length=1033301 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || || | || || || |||||||| ||||| ||||||||| Sbjct 907421 ATGCCTCCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCG 907480 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || |||| || ||||| ||| | ||||| || ||||| || || Sbjct 907481 GACAAAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGG 907540 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || || || || || || | || | ||| ||||||| ||| Sbjct 907541 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCA 907600 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || ||||| || | ||| || || ||||||||||| Sbjct 907601 ACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCAT 907650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451972525932840