Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq5214 259 4e-64
seq5277 93.3 4e-14
seq4488 91.5 1e-13
seq4172 82.4 7e-11
>seq5214
Length=3698012
Score = 259 bits (286), Expect = 4e-64
Identities = 1143/1796 (64%), Gaps = 40/1796 (2%)
Strand=Plus/Minus
Query 122897 AAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACG 122956
|||| ||||||| ||| || || ||||| |||||||| || || || | || |||
Sbjct 3421979 AAAGATCGCCGAGCGTCCGCAGCACATGCTGATGCGCGTGGCGATCGGAATCCATGGAGA 3421920
Query 122957 CGACATCGAAAACGCGACCG---AAACTTACGATTTGATGTCTCAAAAATTTTTCACGCA 123013
|||||||| ||| ||| | || ||| | || |||| | || ||||| ||
Sbjct 3421919 GGACATCGAT---GCGGCCGTGGAGACCTACAACCTGCTGTCGGAGCGGTTCTTCACCCA 3421863
Query 123014 CGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTT 123073
||| || || | || ||||| | ||| || ||| || |||| ||||| || |
Sbjct 3421862 CGCCTCGCCAACGCTTTTTGCCGCAGCCACAAATCGGCCGCAACTGTCGTCGTGCTTCCT 3421803
Query 123074 GCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTT 123133
||| ||| || | ||| ||| || |||| | | || | ||||| |
Sbjct 3421802 GCTGACCATGACGGCCGACTCGATCGAGGGCATCTTCAAGTCGGTGGAACAGTGCGCCAT 3421743
Query 123134 GATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAG 123193
||| || |||| | || ||||| || |||| || || | | | | | || |
Sbjct 3421742 GATCTCGAAATCGGCAGGAGGCATTGGACTGAATGTCCATTGCATCCGGGCCAAGGGCAC 3421683
Query 123194 CCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAA 123253
| |||| | |||| | || | | || || || | | ||||||| | || | |||
Sbjct 3421682 CTCCATCTGCGGCACGAATGGCACCTCCAATGGCCTGGTACCCATGCTCAGGGTCTTCAA 3421623
Query 123254 TAACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATCTA 123310
|| | | || |||| || ||||| |||||| || || || | || || ||
Sbjct 3421622 CAATGTGGCACGTTACGTGGATCAGGGTGGCGGCAAGCGGCCCGGTGCCTTCGCCATTTA 3421563
Query 123311 TCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTA-AATTTAAAACGCAACATGGGGG 123369
|| || || |||||| || |||| ||| || | || | || | | |||| ||
Sbjct 3421562 CCTGGAGCCCTGGCACTCGGACGTGTTCGAGTTCCTGGAACTCAAGAAG-AACACCGGCA 3421504
Query 123370 CGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGC 123429
||| || || ||||||||| | || ||||| | ||| |||||||| | || |||
Sbjct 3421503 AGGAGGAGAATCGCGCCCGCGATCTCTTCTACGCCCTCTGGATACCCGATCTTTTCATGA 3421444
Query 123430 GACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGA 123489
|||||| | | | |||| | |||||||| |||||||| | || |||||| ||
Sbjct 3421443 AACGCGTCGAGGCCAACGGGGACTGGTCGCTGATGTGTCCGCACAAATGCCCCGGCCTGC 3421384
Query 123490 GCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA--- 123546
||| || | ||| || |||| || || ||||| |||||||||||| || |||
Sbjct 3421383 ACGATGTGTGGGGCGATGAGTTCGAAAAGCTGTACACGCAATACGAGCAGGAGGGCCGTG 3421324
Query 123547 --AACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGT 123604
||| || |||| | | | | || | |||| | ||| || | || ||
Sbjct 3421323 CGAACCGGACGGTCAAGGCACAGTCCTTG--TGGTTCGCCATCATT---GAGTCGCAGGT 3421269
Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664
|||||||| | ||||||||||| | ||| || | ||||||||||| | ||| |||
Sbjct 3421268 GGAAACCGGCAATCCGTACATGCTGTTCAAGGATTCGTGCAACAGGAAGAGCAACCAGCA 3421209
Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGC 123724
|| | || || || || || || ||| | ||| ||||||| | || || || ||
Sbjct 3421208 GAATGTTGGCACCATCAAGTGCAGCAATTTGTGCACCGAAATCGTTGAGTATTCCGC-GC 3421150
Query 123725 CGATCAAG-TGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA-----TCGTTGCGTCGA 123778
|| | || | || ||||| || |||| || ||| | | || |||| || |
Sbjct 3421149 CGGACGAGATTGCAGTGTGCAACCTGGCATCCATTGCCCTCAACATGTTCGTCACGCCCG 3421090
Query 123779 AAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTT 123838
| | | || | | ||||| ||| || || | || || || || | ||| |
Sbjct 3421089 AGAAGACG--TATGATTTCAAAAAACTGAAGGAAGTCACCAAGACGGTTACCAGAAATCT 3421032
Query 123839 GAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAA 123898
||||| || || || | || |||||||| || || | ||||||||||
Sbjct 3421031 CAACAAGATAATTGACATCAACTTTTATCCCCTGCCAGAGACAAAGAAATCTAATTTGAG 3420972
Query 123899 ACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCAT 123958
|| | ||||| || | || | || || || || ||||| | | | |||| |
Sbjct 3420971 GCATCGTCCGGTGGGCATCGGTGTCCAGGGTTTCGCTGACGCCCTGATTCTCATGCGATT 3420912
Query 123959 GCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTA 124018
|| ||||||||||| ||||| | | ||| ||| ||| |||||| ||||| ||
Sbjct 3420911 CCCATACGAAAGCGAGGAAGCCGGTCTTTTGAATCAGCAGATATTCGAAACCATTTACTA 3420852
Query 124019 CGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGC 124078
|||||| ||||| || ||||| || || ||| | | | || | || |||| ||||
Sbjct 3420851 CGGCGCCTTGGAAGCCAGCTGTGAGCTGGCGCAGGTCGAAGGTCCCTATGAAACCTACGA 3420792
Query 124079 GGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAA 124138
||||||||| | |||| || ||| ||||||||||||||||| | | || || |
Sbjct 3420791 GGGCAGCCCCGTGAGCAAGGGAATTCTGCAGTACGACATGTGGGACAAGAAGCCCACGGA 3420732
Query 124139 TTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCT 124198
||||||| ||| | || | ||| | ||||||| | | ||||| ||
Sbjct 3420731 CCTGTGGGATTGGCAGAAACTGAAGGAGTCCATCAAGCAGCACGGTGTCAGGAACTCCCT 3420672
Query 124199 GTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTT 124258
| |||| || |||||| |||||| ||||||| ||||| | || ||||||||||| ||
Sbjct 3420671 GCTGGTTGCACCCATGCCCACGGCATCCACTGCCCAAATAATGGGCAACAACGAATCTTT 3420612
Query 124259 CGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGAT 124318
|||||| | ||| | || | ||| || || || | |||| || || || ||| |
Sbjct 3420611 CGAGCCCTACACAACTAACATTTACACCCGGCGCGTTCTGTCCGGTGAATTCCAGGTGGT 3420552
Query 124319 AAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCGCAA 124378
|| ||||||||| || ||||| | | | |||||| || || | ||| ||
Sbjct 3420551 CAACCATCATTTGTTGAGGGACTTAACCGAGCTGGATTTGTGGGACGACGATATGAAGAA 3420492
Query 124379 CGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGTCAA 124438
| | || ||| | | | || | ||| ||| | | ||||| | | ||
Sbjct 3420491 CCAGATCATTTCCAGCAGGGGTTCAATCCAGAACATTGAGGCCATTCCCCAGAAGGTTCG 3420432
Query 124439 GCAACTGTACAAAACCGTGTGGGAAAT----GAAAAATAAACGATTAATTGAAATGGCCG 124494
| || ||||| |||||||||||||| | || | || |||| |||||||||
Sbjct 3420431 CGATCTTTACAAGACCGTGTGGGAAATCTCCGTGAAGTCCAC----AATTAAAATGGCCG 3420376
Query 124495 TCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCA 124554
|| || || |||| || || |||||||| || || ||| | ||| || || || |
Sbjct 3420375 CAGATCGTGGTGCGTTCATCGACCAAAGTCAGTCGTTCAACATTCATGTGGCAGAGCCGA 3420316
Query 124555 CCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGC-GGACTCAAAACGGGC 124613
||||| | |||| ||| ||| | || | |||| ||| || ||||| || |||
Sbjct 3420315 ACTACGGCAAACTGACGTCCATTCACTTTTACTCCTGGA-AAGCTGGCCTCAAGACCGGC 3420257
Query 124614 ATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAA 124669
||||| || | | || || || || || | || ||||| || ||||| || ||
Sbjct 3420256 ATGTACTATCTGCGCACAAAGCCAGCTGCGAACGCGATTCAGTTCACCGTGGATAA 3420201
>seq5277
Length=7425378
Score = 93.3 bits (102), Expect = 4e-14
Identities = 161/232 (69%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||||||||| || | | ||| | || || || |||||||| ||||| || ||||||
Sbjct 1194381 ATTCCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCG 1194322
Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||| | | | || ||||| || || || || | ||||| || |||||||| |
Sbjct 1194321 --GACAGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTG 1194264
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288
| ||||| || || || || || ||||| || | || | |||||| || | ||
Sbjct 1194263 GGGGAATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCT 1194204
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || || || |||| || ||||| ||||| || || || || ||||||||
Sbjct 1194203 CCACCTCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || || ||||| ||||| || || ||| | || | ||| ||||| |||
Sbjct 1193442 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAACTGT 1193383
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||||||| | || | || ||||| || || ||||| || || || || ||||||||
Sbjct 1193382 TTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATTTTA 1193323
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|| | || | || | ||| || |||| || || || ||||| | ||||| |||||
Sbjct 1193322 GCCTTCA-CGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTACCGGT 1193264
Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| || ||||||||
Sbjct 1193263 AAGGGTCTTTACGAAGATTTGCAT 1193240
Score = 82.4 bits (90), Expect = 7e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || |||||||||||||| || || ||| | |||| ||| || | ||
Sbjct 1193670 TGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCCTCAAGCTGC 1193611
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || || | |||||||| ||||| || || |||||||| || || || ||||| ||
Sbjct 1193610 TTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTG 1193551
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|| | || | ||| || |||| || || || ||||| | ||||| ||||||
Sbjct 1193550 GCCTTCACATTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTTCCGGTT 1193491
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
| || || || || ||||||||
Sbjct 1193490 AAGGTCTTCACGAAGATTTGCAT 1193468
>seq4488
Length=533506
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || ||||| || | | ||| ||||| || || || ||||| ||||| || || ||
Sbjct 135534 ATGCCACCGCGCAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 135475
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| |||| || || || ||| | |||| || ||||| || ||
Sbjct 135474 GACAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 135415
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||| || || || ||||| || || | || | ||||||||||| |||
Sbjct 135414 GGAATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCC 135355
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | || | || |||||||| || ||||| ||||| || |||||
Sbjct 135354 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305
>seq4172
Length=1033301
Score = 82.4 bits (90), Expect = 7e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| || || | || || | || || || |||||||| ||||| |||||||||
Sbjct 907421 ATGCCTCCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCG 907480
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || || |||| || ||||| ||| | ||||| || ||||| || ||
Sbjct 907481 GACAAAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGG 907540
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
||||| || || || || || || || || | || | ||| ||||||| |||
Sbjct 907541 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCA 907600
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | ||| | || ||||| || | ||| || || |||||||||||
Sbjct 907601 ACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCAT 907650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451972525932840
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