Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5242 145 9e-30 seq5074 122 1e-22 seq4086 118 1e-21 seq4085 118 1e-21 seq5078 89.7 6e-13 >seq5242 Length=5320397 Score = 145 bits (160), Expect = 9e-30 Identities = 289/420 (69%), Gaps = 6/420 (1%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||| |||||||||||| || ||||| || || || ||| ||||||| Sbjct 3387694 GTACTCGCCCACCTTCTTCTCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTCCAT 3387753 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 127349 || | || |||||||| | ||| | || ||| || | || | || || | | Sbjct 3387754 GAAGTTGAACGGGTTCTTGGTGTTGTAGATC-TTGCCAACGCCCAACTCCACCAGCAAGC 3387812 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT-A 127408 |||||| || |||||||||||| |||||| ||| ||||||| ||||||||||| | Sbjct 3387813 GATCCGCCACAAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCCGATGAGGTTCA 3387872 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || ||||| || |||| ||| ||||||| ||| || || || | ||| || Sbjct 3387873 CA-GGCAGGGCGTCTGTGAGGAACTCCTGCTCAATGAGCACCGCATCGCGGATGATCTCG 3387931 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAGCAAACTC 127527 || | | | | | || ||| | || || ||| | ||| || || || Sbjct 3387932 ATGAT-GCGCTCGCGTCTGGGTCGCTGCACCAGGTGCTGGAACATCAGCACGGCGAAGTC 3387990 Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587 ||| | |||||||| |||||||| || || || |||||| ||| || ||||| || Sbjct 3387991 ACAGTGCAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAG 3388050 Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||||||| ||||||||| | || ||| ||||||||| |||||||| Sbjct 3388051 ACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCAC 3388110 >seq5074 Length=4358836 Score = 122 bits (134), Expect = 1e-22 Identities = 176/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986 ||| ||||| ||| | | || || || || ||||| | |||||| || |||||||| || Sbjct 3524640 ATCCTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGCAGATTGATGTT 3524581 Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 176045 ||||| ||||| | ||| | |||| || || || || ||| || | | |||| || | Sbjct 3524580 GTTTGCGCCCACAAAGTTCTGGGCCAGATTCACGATGGTCATCTGCAACG-AGACCTCGC 3524522 Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCAT 176105 ||||||||||||||||| | || ||||| | | | | ||| || ||||||| |||| Sbjct 3524521 CGTGATGGTAGGCCGACATCTCTGCCACCGAACCGGATAGCTGGGCGACCTTCACCTCAC 3524462 Query 176106 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 176165 |||| |||| | | |||||| | |||| ||||| | ||| ||||| || || | Sbjct 3524461 GCTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGGCCGGGCTTCAGCCCAT 3524402 Query 176166 CGGCCA 176171 || ||| Sbjct 3524401 CGACCA 3524396 >seq4086 Length=80244 Score = 118 bits (130), Expect = 1e-21 Identities = 258/377 (68%), Gaps = 16/377 (4%) Strand=Plus/Minus Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || ||||||||| || || || || || || || ||| | | ||| ||||| || Sbjct 8884 CTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGGACGGTTGGT 8825 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAG 12814 ||||| || | || | ||| |||||| || ||||| ||||| ||| || | Sbjct 8824 GGCCGCAATCAGAATAACGCCT---TCGTTACTTTCAAAGCCGTCCATTTCAACCAGCAT 8768 Query 12815 TTGATTGATGGTTTGTTCACGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTG 12871 || |||| || ||||| |||||||| || ||| | | || ||| || ||| | | | Sbjct 8767 CTGGTTGAGTGTCTGTTCGCGTTCATCGTTACCGCCGCCCATGCCAGCCCCACGGTGGCG 8708 Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGA-TTTTCACGGGCAA 12930 || ||||||||||||||||||||||| | || |||||| | |||| | | Sbjct 8707 G---CCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTTCTTGCCCTG 8651 Query 12931 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 12990 | || || || || ||||| | ||||| ||||| || ||||| |||||||| | | Sbjct 8650 C-TCGAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAG 8592 Query 12991 CGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 13049 | ||||| || | || ||| || || |||| ||||||||| || || || || || || Sbjct 8591 AGCCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGC 8533 Query 13050 GTCTTCCCCGTCCCTGG 13066 ||||| || || || || Sbjct 8532 GTCTTACCTGTGCCCGG 8516 >seq4085 Length=47143 Score = 118 bits (130), Expect = 1e-21 Identities = 258/377 (68%), Gaps = 16/377 (4%) Strand=Plus/Minus Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || ||||||||| || || || || || || || ||| | | ||| ||||| || Sbjct 25342 CTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGGACGGTTGGT 25283 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAG 12814 ||||| || | || | ||| |||||| || ||||| ||||| ||| || | Sbjct 25282 GGCCGCAATCAGAATAACGCCT---TCGTTACTTTCAAAGCCGTCCATTTCAACCAGCAT 25226 Query 12815 TTGATTGATGGTTTGTTCACGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTG 12871 || |||| || ||||| |||||||| || ||| | | || ||| || ||| | | | Sbjct 25225 CTGGTTGAGTGTCTGTTCGCGTTCATCGTTACCGCCGCCCATGCCAGCCCCACGGTGGCG 25166 Query 12872 CTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGA-TTTTCACGGGCAA 12930 || ||||||||||||||||||||||| | || |||||| | |||| | | Sbjct 25165 G---CCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTTCTTGCCCTG 25109 Query 12931 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 12990 | || || || || ||||| | ||||| ||||| || ||||| |||||||| | | Sbjct 25108 C-TCGAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAG 25050 Query 12991 CGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 13049 | ||||| || | || ||| || || |||| ||||||||| || || || || || || Sbjct 25049 AGCCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGC 24991 Query 13050 GTCTTCCCCGTCCCTGG 13066 ||||| || || || || Sbjct 24990 GTCTTACCTGTGCCCGG 24974 >seq5078 Length=1488007 Score = 89.7 bits (98), Expect = 6e-13 Identities = 249/374 (67%), Gaps = 10/374 (3%) Strand=Plus/Minus Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || ||| || || ||||| ||||| || | || |||||| | ||| ||||| || Sbjct 1429850 CTGACGGTCGAAACGACCGGGGCGCAGCAATGCCGGGTCAAGCACATCTGGACGGTTGGT 1429791 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTG 12817 || || || | | | ||| | | | || || |||||||||||| || | || Sbjct 1429790 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 1429731 Query 12818 ATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATAC-CACCCGCACTGCGTTGCTTAC 12876 || | || || || || |||||||| || | || | ||| |||| || || || Sbjct 1429730 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 1429672 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACG--GTTGA-TTTTCACGGGCAACTT 12933 | ||||| |||||||| |||||||| | || || | | ||| |||| || | || Sbjct 1429671 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC---CCTGTT 1429615 Query 12934 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 12993 | || || || ||||| | ||||| ||||| || ||||| |||||||| | || Sbjct 1429614 CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAAC 1429555 Query 12994 CGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 13052 | | | || | | ||| || || |||| |||||| || ||||| ||||| | ||||| Sbjct 1429554 CAG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 1429496 Query 13053 TTCCCCGTCCCTGG 13066 || || || || || Sbjct 1429495 TTACCAGTGCCCGG 1429482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613465565867640