Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5242 246 5e-60 seq5214 217 2e-51 >seq5242 Length=5320397 Score = 246 bits (272), Expect = 5e-60 Identities = 550/812 (68%), Gaps = 28/812 (3%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| || ||||||||||| |||| || || |||||||| ||| Sbjct 3387703 CACCTTCTTCTCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTCCATGAAGTTGAA 3387762 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| || ||| ||| || || | || ||||||| | || ||||| Sbjct 3387763 CGGGTTCTTGGTGTTGTAGATCTTGCCAACGCCCAACTCCACCAGCAAGCGATCCGCCAC 3387822 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 ||| || ||||| ||||| | |||||||| || || | || | || || || || Sbjct 3387823 AAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCCGATGAGGTTCACAGGCAGGGC 3387882 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGTT 159881 || | || ||||||| |||||| ||||| ||| | |||| ||| || || | Sbjct 3387883 GTCTGTGAGGAACTCCTGCTCAATGAGCACCGCATCGCGGATGATCT-CGATGATGCGCT 3387941 Query 159882 CGTACCCCGGCTTGCC-CAAAATGTGGTCCTTAAACAGGAGGCACG-CAAAGTCGCAGTG 159939 || | || | || || | ||| || |||| || |||| | ||||| ||||| Sbjct 3387942 CGCGTCTGGG-TCGCTGCACCAGGTG---CTGGAACATCAG-CACGGCGAAGTCACAGTG 3387996 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 || ||||||||| || ||||| | ||||||||| | | | || |||||||| | || || Sbjct 3387997 CAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGACCGCG 3388056 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGC 160059 | || ||||| ||||||| || || ||||| || ||||| ||||||||||| || Sbjct 3388057 CTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGC 3388116 Query 160060 AAACGCCACGAGCCTCTCACCAAAAGAGGCG---TTGGTGTCATGGGTCCACCTTTTGGC 160116 ||| || | || | ||| || ||| ||| |||| | | |||| || Sbjct 3388117 AAATGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGAGGA---GATCCAGGACAGAGC 3388173 Query 160117 CCATTCAGCCTTCTTTGCGATGCAC----GGCATGCGCTCGACGGCGTTAAACAATCTGT 160172 ||| |||||||| ||| | ||| ||||| ||||| |||||| |||| | Sbjct 3388174 CCAGTCAGCCTT----GCGCTTCACCGCCGGCATCGTCTCGATGGCGTTGAACAGGTACT 3388229 Query 160173 CCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCA 160232 || ||| | | |||| ||| ||| | |||||| |||||| || | ||||| Sbjct 3388230 CCCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACGCTGTACATCTCCGAGTGCA 3388289 Query 160233 CATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCA-GATACTGCACCTCC 160291 | || || ||||| ||||| ||| |||||| | |||||| ||| |||||||||| Sbjct 3388290 CGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCCGTGAT-CTGCACCTCC 3388348 Query 160292 TGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCC 160351 || |||||| | |||| || |||| || | || |||| ||| |||||||| ||| Sbjct 3388349 TGGCTGAACCGCTCCACCAGGTTCTCATTGACGATGCCATCGGAGGCGGCAAAGAAGGCC 3388408 Query 160352 AACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACG 160411 | |||||| |||||||| || | |||||| | ||||| | | ||||| |||| | Sbjct 3388409 AGCACGTGCGAGATGAAGTGACGCTCGTCGTCCTTGAGGC---GGTGCCAGTCGGTCAGG 3388465 Query 160412 TCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 || | || || ||| ||||| || || |||| Sbjct 3388466 TCCTTGGACAGATCCACCTCCTCTACGGTCCA 3388497 >seq5214 Length=3698012 Score = 217 bits (240), Expect = 2e-51 Identities = 461/682 (68%), Gaps = 12/682 (2%) Strand=Plus/Plus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 |||| ||||| ||||||||||| |||||| | || ||| | | | |||||||||||||| Sbjct 3420199 TCTTATCCACGGTGAACTGAATCGCGTTCGCAGCTGGCTTTGTGCGCAGATAGTACATGC 3420258 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 ||||||| ||||| | ||| ||| | ||| ||||| | |||||||| ||| | Sbjct 3420259 CGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTTGCCGTAGTTCG 3420318 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | || |||| |||||||| | ||||| |||||||||||||| | | |||||||||| Sbjct 3420319 GCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGATGAACGCACCACGATCTGCGG 3420378 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||| || || ||| |||| || || |||||||| |||||| | | || | | Sbjct 3420379 CCATTTTAATTGTGGACTTCACGGAGATTTCCCACACGGTCTTGTAAAGATCGCGAACCT 3420438 Query 204078 GTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCT-CATCCT 204135 || || | | | | | || || ||| || || || || || | ||| || | Sbjct 3420439 TCTGGGGAATGGCCT-CAATGTTCTGGATTGAACCCCTGCTGGAAATGA-TCTGGTTCTT 3420496 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | || || |||||| ||| | | | | |||| || || || |||||| | Sbjct 3420497 CATATCGTCGTCCCACAAATCCAGCTCGGTTAAGTCCCTCAACAAATGATGGTTGACCAC 3420556 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || |||||||| || | |||||| | | ||| | ||| | || ||||| | Sbjct 3420557 CTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAAAGA 3420616 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||||||||||| | || || || ||| |||||||||||||| || | |||||||| Sbjct 3420617 TTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCAACCAGCAGGGA 3420676 Query 204316 GTTGCGCACACCGT----ATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 ||| | ||||||| || ||||| | |||||| ||| || || Sbjct 3420677 GTTCCTGACACCGTGCTGCTTGATGGACTC----CTTCAGTTTCTGCCAATCCCACAGGT 3420732 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 | |||| ||| | ||||||||||| |||| | || || | || || |||||||||| Sbjct 3420733 CCGTGGGCTTCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCT 3420792 Query 204432 TGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGAT 204491 ||| || ||| || || | | ||||||| || ||| ||| |||| | Sbjct 3420793 CGTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGCTGGCTTCCAAGGCGCCGT 3420852 Query 204492 AGTACATGGTCTCAAAGATCTG 204513 |||| ||||| || || ||||| Sbjct 3420853 AGTAAATGGTTTCGAATATCTG 3420874 Score = 150 bits (166), Expect = 3e-31 Identities = 491/752 (65%), Gaps = 18/752 (2%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| ||||| ||||||||||| || | |||||| | || |||| ||||||||| Sbjct 3421160 CTCAACGATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCT 3421219 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 ||| | ||| || || |||||| ||| |||| |||| | ||| | |||| ||| || Sbjct 3421220 CTTCCTGTTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTCCACCTGCGACTC 3421279 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACT-TGCTTCACGTACATCCCTTGAGACT 205061 | ||| | |||||| | |||| || | | || || |||| | || Sbjct 3421280 AATGATGGCGAACCACAAGGACTGTGCCTTGACCGTCCGGTTCGCACGGCCCTCCTG-CT 3421338 Query 205062 CGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATT 205121 |||||| ||||||||| | || ||| || |||| || ||| || || |||| Sbjct 3421339 CGTATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTGCAGGCCGGGGCATT 3421398 Query 205122 TTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGC 205181 | | ||||||||||| ||||| | | | | | || | | ||| || || ||| Sbjct 3421399 TGTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTTCATGAAAAGATCGG 3421458 Query 205182 TGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTT 205241 ||||| ||| |||| || ||||| ||||| | | | | || | || |||||| | Sbjct 3421459 GTATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTTCTTCT 3421518 Query 205242 TCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCG 205300 | | ||||| || || | | ||| | |||||| ||||| | | | ||| | || Sbjct 3421519 TGAGTTCCAG-GAACTCGAACACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCGAAGGCA 3421577 Query 205301 CCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGC 205360 || |||| |||| |||||||| ||||| || | || |||||| || | ||| Sbjct 3421578 CCGGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTTGAAGACCCTGAGC 3421637 Query 205361 ATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTC 205420 || || ||||| || |||| ||| || ||||||| | ||||| | ||| | |||| Sbjct 3421638 ATGGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGATGGAGGTGCCCTTGGCCCGG 3421697 Query 205421 A--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTT 205478 | | |||| || | ||||| || || | | || | |||| |||||||| || Sbjct 3421698 ATGCAATGGACAT--TCAGTCCAATGCCTCCTGCCGATTTCGAGATCATGGCGCACTGTT 3421755 Query 205479 GCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAG 205538 || | || ||||||| |||| || ||| ||| || |||| ||| ||||||| | Sbjct 3421756 CCACCGACTTGAAGATGCCCTCGATCGAGTCGGCCGTCATGGTCAGCAGGAAGCACGACG 3421815 Query 205539 CCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGC 205597 ||| | ||| | || ||| | ||| || ||||| || ||||||| ||||| | Sbjct 3421816 ACAGTTGCGGCCGA-TTTGTGGCTGCGGCAAAAAGCGTTGGCGAGGCGTGGGTGAAGAAC 3421874 Query 205598 TTCTCGCTCAAACACC----TGTAGGTCTCCA 205625 ||||| ||| | |||||||||||| Sbjct 3421875 ----CGCTCCGACAGCAGGTTGTAGGTCTCCA 3421902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795101238780240