Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq4172 147 2e-30
seq4488 136 4e-27
seq5277 122 1e-22
seq5214 100 3e-16
>seq4172
Length=1033301
Score = 147 bits (162), Expect = 2e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| | | ||||| |||| |||||| || |||||||||||| ||||||||||
Sbjct 906966 TGCCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGG 907025
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| |||||||| | || || |||||||| |||||||| ||||| |||||||| || | |
Sbjct 907026 ACAGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGG 907085
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | |||||||||| |||||| ||| | || | | || ||| | || |
Sbjct 907086 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAA 907145
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| |||||||| ||||| |||| || ||||| ||||| |||||
Sbjct 907146 CCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194
Score = 132 bits (146), Expect = 5e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| |||| |||||| || |||||| ||||| ||||||||||| |||||||| |
Sbjct 906751 ACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCC 906810
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || |||||||| |||||||| ||||| |||||||| || | || | | |||||
Sbjct 906811 ATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTT 906870
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| |||||| ||| | || | | || ||| | || || |||| |||||
Sbjct 906871 GTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACCTCCAAAGTGAT 906930
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| || || || || |||||||| |||||
Sbjct 906931 GGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 906966
>seq4488
Length=533506
Score = 136 bits (150), Expect = 4e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||||||| | || |||||| ||||| |||||||| || || ||||| | || ||
Sbjct 135514 CACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCCTC 135455
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||||||||||| |||| |||||||| || | || | || ||||||||||
Sbjct 135454 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 135395
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| ||| | || | | |||||| | ||||| |||| |||||||| ||
Sbjct 135394 AATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 135335
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || ||||| |||||||| |||||
Sbjct 135334 GCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305
>seq5277
Length=7425378
Score = 122 bits (134), Expect = 1e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | || ||| | ||||| || | || ||||| ||||| ||||| |||||
Sbjct 1194378 CCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGAC 1194319
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|||||||| |||| || | |||||||||||| || ||||| ||||||||||| | ||
Sbjct 1194318 AGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1194259
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | |||||||||| ||| || ||| | || | | ||||| | |||||
Sbjct 1194258 ATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACC 1194199
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| || ||||| ||||| || || || || || |||||||||||
Sbjct 1194198 TCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152
Score = 120 bits (132), Expect = 3e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||||||||| |||||||||||||| || || | || || |||||||||||||| ||
Sbjct 1193658 TCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCCTCAAGCTGCTTGCCGGCAAAA 1193599
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| |||||||| || | || | || |||||||||| ||||| ||| | ||
Sbjct 1193598 ATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTC 1193539
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | || || | ||| || |||| ||||||||||| || || | || || ||
Sbjct 1193538 TCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTTCCGGTTAAGGTCTTCACG 1193479
Query 46583 AAGATTTGCAT 46593
|||||||||||
Sbjct 1193478 AAGATTTGCAT 1193468
Score = 109 bits (120), Expect = 6e-19
Identities = 141/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|| || || || ||||| ||||| ||||| || | || || |||||||||||||| ||
Sbjct 1192974 TCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAAG 1192915
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|||| |||||||| || | || | || |||||||||| ||||| ||| | ||
Sbjct 1192914 ATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTC 1192855
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||| ||| | || || |||| || ||||| ||||| |||| || || |||
Sbjct 1192854 TCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCACA 1192795
Query 46583 AAGATTTGCATTTTG 46597
||||| |||||||||
Sbjct 1192794 AAGATCTGCATTTTG 1192780
Score = 102 bits (112), Expect = 9e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | | ||||||||||| ||||| || |||||| ||||| ||||| || |
Sbjct 1193240 TGCCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCG 1193181
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| | || || | || || || ||||| || || || || | |||||||| || | |
Sbjct 1193180 ACAACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGG 1193121
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || ||||||||| |||||| ||| | || | | || || | ||| |
Sbjct 1193120 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAA 1193061
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| |||||||| ||||||||||| || || || ||||| |||||
Sbjct 1193060 CCTCCAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| | || || | ||| || || |||||
Sbjct 1193431 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAA 1193372
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | | |||||||||| || || ||| | |
Sbjct 1193371 GATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATTTTAGCCTTCACGTT 1193312
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || || | ||| || |||| ||||||||||| || || || || || ||
Sbjct 1193311 CTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTAC 1193252
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 1193251 GAAGATTTGCAT 1193240
Score = 93.3 bits (102), Expect = 5e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
|||| || | | ||||||||||| |||| || ||| || ||||| |||||||| |
Sbjct 1194152 TGCCACCCCGAAGACGCAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCG 1194093
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| | || || | || || || ||||| || ||||| || | |||||||| || | |
Sbjct 1194092 ACAAGGTACGGCCATCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGG 1194033
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || ||| |||||| |||||| ||| | || | | || || | || |
Sbjct 1194032 GAATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAA 1193973
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| |||| || |||||||| || ||||| || || || |||||||||||
Sbjct 1193972 CCTCCAGAGTTATGGTTTTACCGGTCAGGGTCTTCACGAAGATTTGCAT 1193924
>seq5214
Length=3698012
Score = 100 bits (110), Expect = 3e-16
Identities = 154/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| ||||| || |||||| || || || ||||| || || ||||| |
Sbjct 3523183 ACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCC 3523124
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||| ||||| |||| |||||||| || | || | | || ||
Sbjct 3523123 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTT 3523064
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| ||||| || | | | | || || || ||| || || | |||||
Sbjct 3523063 GTCCTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGAT 3523004
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
||| |||||||| || || ||||| ||||| ||||| |||
Sbjct 3523003 GGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 3522964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565200041509080
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