Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4172 147 2e-30 seq4488 136 4e-27 seq5277 122 1e-22 seq5214 100 3e-16 >seq4172 Length=1033301 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| |||| |||||| || |||||||||||| |||||||||| Sbjct 906966 TGCCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGG 907025 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || |||||||| |||||||| ||||| |||||||| || | | Sbjct 907026 ACAGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGG 907085 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||||| |||||| ||| | || | | || ||| | || | Sbjct 907086 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAA 907145 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||| |||| || ||||| ||||| ||||| Sbjct 907146 CCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| |||||| || |||||| ||||| ||||||||||| |||||||| | Sbjct 906751 ACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCC 906810 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| |||||||| ||||| |||||||| || | || | | ||||| Sbjct 906811 ATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTT 906870 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | || | | || ||| | || || |||| ||||| Sbjct 906871 GTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACCTCCAAAGTGAT 906930 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || || |||||||| ||||| Sbjct 906931 GGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 906966 >seq4488 Length=533506 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| ||||| |||||||| || || ||||| | || || Sbjct 135514 CACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCCTC 135455 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| |||| |||||||| || | || | || |||||||||| Sbjct 135454 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 135395 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||| | || | | |||||| | ||||| |||| |||||||| || Sbjct 135394 AATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 135335 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || ||||| |||||||| ||||| Sbjct 135334 GCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305 >seq5277 Length=7425378 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | || ||| | ||||| || | || ||||| ||||| ||||| ||||| Sbjct 1194378 CCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGAC 1194319 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| |||| || | |||||||||||| || ||||| ||||||||||| | || Sbjct 1194318 AGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1194259 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||||| ||| || ||| | || | | ||||| | ||||| Sbjct 1194258 ATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACC 1194199 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||| ||||| || || || || || ||||||||||| Sbjct 1194198 TCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||||||||| || || | || || |||||||||||||| || Sbjct 1193658 TCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCCTCAAGCTGCTTGCCGGCAAAA 1193599 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| |||||||| || | || | || |||||||||| ||||| ||| | || Sbjct 1193598 ATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTC 1193539 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || | ||| || |||| ||||||||||| || || | || || || Sbjct 1193538 TCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTTCCGGTTAAGGTCTTCACG 1193479 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 1193478 AAGATTTGCAT 1193468 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || || || ||||| ||||| ||||| || | || || |||||||||||||| || Sbjct 1192974 TCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAAG 1192915 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||| || | || | || |||||||||| ||||| ||| | || Sbjct 1192914 ATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTC 1192855 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||| ||| | || || |||| || ||||| ||||| |||| || || ||| Sbjct 1192854 TCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCACA 1192795 Query 46583 AAGATTTGCATTTTG 46597 ||||| ||||||||| Sbjct 1192794 AAGATCTGCATTTTG 1192780 Score = 102 bits (112), Expect = 9e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||||||||| ||||| || |||||| ||||| ||||| || | Sbjct 1193240 TGCCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCG 1193181 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | || || | || || || ||||| || || || || | |||||||| || | | Sbjct 1193180 ACAACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGG 1193121 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | || | | || || | ||| | Sbjct 1193120 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAA 1193061 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| |||||||| ||||||||||| || || || ||||| ||||| Sbjct 1193060 CCTCCAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| | || || | ||| || || ||||| Sbjct 1193431 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAA 1193372 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||||||| || || ||| | | Sbjct 1193371 GATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATTTTAGCCTTCACGTT 1193312 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | ||| || |||| ||||||||||| || || || || || || Sbjct 1193311 CTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTAC 1193252 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 1193251 GAAGATTTGCAT 1193240 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||||||||| |||| || ||| || ||||| |||||||| | Sbjct 1194152 TGCCACCCCGAAGACGCAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCG 1194093 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | || || | || || || ||||| || ||||| || | |||||||| || | | Sbjct 1194092 ACAAGGTACGGCCATCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGG 1194033 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||| |||||| |||||| ||| | || | | || || | || | Sbjct 1194032 GAATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAA 1193973 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| || |||||||| || ||||| || || || ||||||||||| Sbjct 1193972 CCTCCAGAGTTATGGTTTTACCGGTCAGGGTCTTCACGAAGATTTGCAT 1193924 >seq5214 Length=3698012 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| ||||| || |||||| || || || ||||| || || ||||| | Sbjct 3523183 ACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCC 3523124 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| ||||| |||| |||||||| || | || | | || || Sbjct 3523123 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTT 3523064 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||| || | | | | || || || ||| || || | ||||| Sbjct 3523063 GTCCTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGAT 3523004 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| |||||||| || || ||||| ||||| ||||| ||| Sbjct 3523003 GGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 3522964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565200041509080