Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq4172 116 3e-21 seq5277 82.4 5e-11 >seq4172 Length=1033301 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| |||||| ||||||||||||||| || ||||| || || || |||| Sbjct 906967 GCCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGA 907026 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | |||| |||| |||| || || ||| | ||||| |||||||||||||| | ||| Sbjct 907027 CAGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGG 907086 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| || || || | || | | || || | || || Sbjct 907087 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAAC 907146 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||||||| || || || || || ||||| || ||||||||||||||| Sbjct 907147 CTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCATG 907195 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 |||| || |||| |||||| ||||||||||||||| || || || || || || |||| Sbjct 906738 CGCCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGG 906797 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 || | |||| |||| |||| || || ||| | || || |||||||||||||| | || Sbjct 906798 ACAGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGG 906857 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||||| ||||| || || || | || | | || || | || | Sbjct 906858 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGA 906917 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | |||||||| || || || || || | ||| || || |||||||||||| Sbjct 906918 CCTCCAAAGTGATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCATG 906967 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || ||||||||||||||| || || || || |||||||||| Sbjct 907195 GCCTCCACGGAGACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGA 907254 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| |||| || || ||| | || || |||||||||||||| | ||| Sbjct 907255 CAAGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 907314 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| || || || | || | | || || | || || Sbjct 907315 AATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAAC 907374 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||||||| || || || || || | ||| || ||||||||||||||| Sbjct 907375 CTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 907423 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| |||||| ||||| || | || ||| || || || |||||||||| Sbjct 907423 GCCTCCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGA 907482 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| | || |||| || || ||| | ||||| |||||||||||||| | ||| Sbjct 907483 CAAAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGG 907542 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || ||||| || || || | || | | || || | || || Sbjct 907543 AATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAAC 907602 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTGTTT 39730 |||||||| || || || || || ||||| || ||||| || ||||| | | ||||| Sbjct 907603 CTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATATTGGCTGTTT 907661 >seq5277 Length=7425378 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | || ||| || || || || ||||||| | Sbjct 1194378 CCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGAC 1194319 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| | || ||||| || || ||| |||| || ||||||||||| || | ||| Sbjct 1194318 AGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1194259 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| ||||| || | || | | ||||| | ||||| Sbjct 1194258 ATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACC 1194199 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||| ||||| || || || |||| || || |||||||| |||||| Sbjct 1194198 TCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCATG 1194151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347346615964757