Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5277 120 1e-21 seq5214 107 8e-18 >seq5277 Length=7425378 Score = 120 bits (132), Expect = 1e-21 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || |||||||| || ||||| || |||||| | ||| Sbjct 1193240 ATGCAAATCTTCGTAAAGACCCTTACCGGTAAAACCATCACTCTGGAGGTTGAACCTTCT 1193299 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | || |||||||| || ||||| ||||||||||| ||||| Sbjct 1193300 GATACCATTGAGAACGTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAG 1193359 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| |||| ||||| | |||||||| | ||| | | || || || Sbjct 1193360 CAGCGTCTCATCTTCGCAGGAAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAAC 1193419 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 1193420 ATCCAGAAGGAGTCTACCCTTCACTTGGT 1193448 >seq5214 Length=3698012 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || || || || || || |||||||| || ||| | || Sbjct 3522968 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 3523027 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | ||||| || ||||| || || |||||||||||||| ||||| Sbjct 3523028 GATACTATCGAAAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 3523087 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || |||||||| | || | | || ||||| Sbjct 3523088 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 3523147 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || | ||||| || Sbjct 3523148 ATTCAGAAGGAGTCCACTTTGCACTTGGT 3523176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975580970880332