Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq5078 116 5e-21
seq5242 105 8e-18
seq4086 105 8e-18
seq4085 105 8e-18
>seq5078
Length=1488007
Score = 116 bits (128), Expect = 5e-21
Identities = 330/498 (66%), Gaps = 12/498 (2%)
Strand=Plus/Minus
Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940
|| ||| || || ||||| ||||| || | || ||||| | ||| || || ||
Sbjct 1429850 CTGACGGTCGAAACGACCGGGGCGCAGCAATGCCGGGTCAAGCACATCTGGACGGTTGGT 1429791
Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTG 16000
||||| || | | | ||| | | | ||||||||||||||||| || | |||
Sbjct 1429790 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 1429731
Query 16001 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC-ACCAGCACTGCGTTGCTTTC 16059
||| | || || || || |||||||| || | || | ||| |||| || || |
Sbjct 1429730 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 1429672
Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATG--GTTGATTTTCGCGAGCGACTTC 16117
| ||||||||||| ||||||||||||| ||||| | | ||||||| | | |||
Sbjct 1429671 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTT--TTACCCTGTTC 1429614
Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177
|| | || || ||||| || || ||||| || ||||| |||||||||| | |
Sbjct 1429613 GAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAACC 1429554
Query 16178 GGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 16236
| | || | | ||| || ||||| | |||||| |||||||| ||||| | || || |
Sbjct 1429553 AG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTTT 1429495
Query 16237 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTCC 16294
|||| || || ||| ||| | || || | ||| ||||| || |||| | |
Sbjct 1429494 TACCAGTGCCCGGCGGCCCCACAAGCAGCACGCCTTTGGGAATTTTACCGCCCAAGCGCG 1429435
Query 16295 AAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGC 16354
|| | ||| || | || ||||||||||| || || | | ||| |||| || |
Sbjct 1429434 TAA--ACTTCTGTGGGTCTTTCAGAAAATCCACGATTTCCTGAAGTTCCCCTTTAGCTTC 1429377
Query 16355 GTCAATCCCCTCAACATC 16372
|||||||| | |||||
Sbjct 1429376 ATCAATCCCGGCTACATC 1429359
>seq5242
Length=5320397
Score = 105 bits (116), Expect = 8e-18
Identities = 295/444 (66%), Gaps = 8/444 (2%)
Strand=Plus/Minus
Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239
||||| || |||||||||| || ||||| ||||||||| || |||| | |
Sbjct 3388134 GAGCGCATCATCGCATTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCC 3388075
Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299
|||| ||||| |||||||| ||||| ||||| || || ||||||||||||||| |||
Sbjct 3388074 ATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCCAACGAGCTGATC 3388015
Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG-GAACTTTTCAAATTATTGCGTAT 102358
|| || ||||||||| | ||| || || || ||| | || || | | | |
Sbjct 3388014 TCCCGCGACGAGGGATTGCACTGTGACTTCGCCGTGCTGATGTTCCAGCACCTGGTGCAG 3387955
Query 102359 TAAACCA-ACGACTGAGACTATTCAT-TCTATTGTTAAGGAAGCCGTTGAGATTGAGAAG 102416
| ||| ||| ||| | |||| || | || || || |||||| ||
Sbjct 3387954 CGACCCAGACG--CGAG-CGCATCATCGAGATCATCCGCGATGCGGTGCTCATTGAGCAG 3387898
Query 102417 GGATTCATATTGGATGCCCTTCCATGCG-CTCTCATCGGTATGAATTCTGAAAAGATGTC 102475
| ||| | || ||||| || || | |||||||| ||||| | ||| ||||||
Sbjct 3387897 GAGTTCCTCACAGACGCCCTGCC-TGTGAACCTCATCGGCATGAACTGTGACCTGATGTC 3387839
Query 102476 CGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAATTTG 102535
| | || ||||||| ||| | ||| | ||| || | || | || || || |
Sbjct 3387838 CCAGTACATTGAGTTTGTGGCGGATCGCTTGCTGGTGGAGTTGGGCGTTGGCAAGATCTA 3387779
Query 102536 GAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTT 102595
||| ||||||| || || |||||||||||| || || ||||| ||||| || ||
Sbjct 3387778 CAACACCAAGAACCCGTTCAACTTCATGGAGATGATCTCGCTGGACGGCAAGACCAATTT 3387719
Query 102596 CTTCGAAAAGAGGGTTGGGGACTA 102619
|||||| |||| ||| || || ||
Sbjct 3387718 CTTCGAGAAGAAGGTGGGCGAGTA 3387695
>seq4086
Length=80244
Score = 105 bits (116), Expect = 8e-18
Identities = 254/376 (68%), Gaps = 14/376 (4%)
Strand=Plus/Minus
Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940
|| ||||||||| || || || || || || || || | | ||| || || ||
Sbjct 8884 CTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGGACGGTTGGT 8825
Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAG 15997
|| || || | || || ||| |||||| ||||| || ||||| || || |
Sbjct 8824 GGCCGCAATCAGAATAACGCCT---TCGTTACTTTCAAAGCCGTCCATTTCAACCAGCAT 8768
Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGC 16055
|||||| | || ||||| |||||||| || | || ||| ||||| | || ||
Sbjct 8767 CTGGTTGAGTGTCTGTTCGCGTTCATCGTTACC--GCCGCCCATGCCAGCCCCACGGTGG 8710
Query 16056 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGAT-TTTCGCGAGCGAC 16114
|| ||||| ||||| || |||||||||| ||||| ||| | |||| | | |
Sbjct 8709 CGGCCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTTCTTGCCCTGC 8650
Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174
| | || | || || || || || |||||||| || ||||| |||||||||| |
Sbjct 8649 T-CGAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAGA 8591
Query 16175 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233
| ||||| || | || ||| || ||||| | |||||||||||| || || || || || |
Sbjct 8590 GCCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGCG 8532
Query 16234 TCTTACCCGTACCTGG 16249
||||||| || || ||
Sbjct 8531 TCTTACCTGTGCCCGG 8516
>seq4085
Length=47143
Score = 105 bits (116), Expect = 8e-18
Identities = 254/376 (68%), Gaps = 14/376 (4%)
Strand=Plus/Minus
Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940
|| ||||||||| || || || || || || || || | | ||| || || ||
Sbjct 25342 CTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGGACGGTTGGT 25283
Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAG 15997
|| || || | || || ||| |||||| ||||| || ||||| || || |
Sbjct 25282 GGCCGCAATCAGAATAACGCCT---TCGTTACTTTCAAAGCCGTCCATTTCAACCAGCAT 25226
Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGC 16055
|||||| | || ||||| |||||||| || | || ||| ||||| | || ||
Sbjct 25225 CTGGTTGAGTGTCTGTTCGCGTTCATCGTTACC--GCCGCCCATGCCAGCCCCACGGTGG 25168
Query 16056 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGAT-TTTCGCGAGCGAC 16114
|| ||||| ||||| || |||||||||| ||||| ||| | |||| | | |
Sbjct 25167 CGGCCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTTCTTGCCCTGC 25108
Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174
| | || | || || || || || |||||||| || ||||| |||||||||| |
Sbjct 25107 T-CGAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAGA 25049
Query 16175 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233
| ||||| || | || ||| || ||||| | |||||||||||| || || || || || |
Sbjct 25048 GCCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGCG 24990
Query 16234 TCTTACCCGTACCTGG 16249
||||||| || || ||
Sbjct 24989 TCTTACCTGTGCCCGG 24974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620700274868880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |