Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5078 116 5e-21 seq5242 105 8e-18 seq4086 105 8e-18 seq4085 105 8e-18 >seq5078 Length=1488007 Score = 116 bits (128), Expect = 5e-21 Identities = 330/498 (66%), Gaps = 12/498 (2%) Strand=Plus/Minus Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940 || ||| || || ||||| ||||| || | || ||||| | ||| || || || Sbjct 1429850 CTGACGGTCGAAACGACCGGGGCGCAGCAATGCCGGGTCAAGCACATCTGGACGGTTGGT 1429791 Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTG 16000 ||||| || | | | ||| | | | ||||||||||||||||| || | ||| Sbjct 1429790 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 1429731 Query 16001 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC-ACCAGCACTGCGTTGCTTTC 16059 ||| | || || || || |||||||| || | || | ||| |||| || || | Sbjct 1429730 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 1429672 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATG--GTTGATTTTCGCGAGCGACTTC 16117 | ||||||||||| ||||||||||||| ||||| | | ||||||| | | ||| Sbjct 1429671 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTT--TTACCCTGTTC 1429614 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177 || | || || ||||| || || ||||| || ||||| |||||||||| | | Sbjct 1429613 GAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAACC 1429554 Query 16178 GGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 16236 | | || | | ||| || ||||| | |||||| |||||||| ||||| | || || | Sbjct 1429553 AG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTTT 1429495 Query 16237 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTCC 16294 |||| || || ||| ||| | || || | ||| ||||| || |||| | | Sbjct 1429494 TACCAGTGCCCGGCGGCCCCACAAGCAGCACGCCTTTGGGAATTTTACCGCCCAAGCGCG 1429435 Query 16295 AAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGC 16354 || | ||| || | || ||||||||||| || || | | ||| |||| || | Sbjct 1429434 TAA--ACTTCTGTGGGTCTTTCAGAAAATCCACGATTTCCTGAAGTTCCCCTTTAGCTTC 1429377 Query 16355 GTCAATCCCCTCAACATC 16372 |||||||| | ||||| Sbjct 1429376 ATCAATCCCGGCTACATC 1429359 >seq5242 Length=5320397 Score = 105 bits (116), Expect = 8e-18 Identities = 295/444 (66%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || |||||||||| || ||||| ||||||||| || |||| | | Sbjct 3388134 GAGCGCATCATCGCATTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCC 3388075 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 |||| ||||| |||||||| ||||| ||||| || || ||||||||||||||| ||| Sbjct 3388074 ATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCCAACGAGCTGATC 3388015 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG-GAACTTTTCAAATTATTGCGTAT 102358 || || ||||||||| | ||| || || || ||| | || || | | | | Sbjct 3388014 TCCCGCGACGAGGGATTGCACTGTGACTTCGCCGTGCTGATGTTCCAGCACCTGGTGCAG 3387955 Query 102359 TAAACCA-ACGACTGAGACTATTCAT-TCTATTGTTAAGGAAGCCGTTGAGATTGAGAAG 102416 | ||| ||| ||| | |||| || | || || || |||||| || Sbjct 3387954 CGACCCAGACG--CGAG-CGCATCATCGAGATCATCCGCGATGCGGTGCTCATTGAGCAG 3387898 Query 102417 GGATTCATATTGGATGCCCTTCCATGCG-CTCTCATCGGTATGAATTCTGAAAAGATGTC 102475 | ||| | || ||||| || || | |||||||| ||||| | ||| |||||| Sbjct 3387897 GAGTTCCTCACAGACGCCCTGCC-TGTGAACCTCATCGGCATGAACTGTGACCTGATGTC 3387839 Query 102476 CGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAATTTG 102535 | | || ||||||| ||| | ||| | ||| || | || | || || || | Sbjct 3387838 CCAGTACATTGAGTTTGTGGCGGATCGCTTGCTGGTGGAGTTGGGCGTTGGCAAGATCTA 3387779 Query 102536 GAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTT 102595 ||| ||||||| || || |||||||||||| || || ||||| ||||| || || Sbjct 3387778 CAACACCAAGAACCCGTTCAACTTCATGGAGATGATCTCGCTGGACGGCAAGACCAATTT 3387719 Query 102596 CTTCGAAAAGAGGGTTGGGGACTA 102619 |||||| |||| ||| || || || Sbjct 3387718 CTTCGAGAAGAAGGTGGGCGAGTA 3387695 >seq4086 Length=80244 Score = 105 bits (116), Expect = 8e-18 Identities = 254/376 (68%), Gaps = 14/376 (4%) Strand=Plus/Minus Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940 || ||||||||| || || || || || || || || | | ||| || || || Sbjct 8884 CTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGGACGGTTGGT 8825 Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAG 15997 || || || | || || ||| |||||| ||||| || ||||| || || | Sbjct 8824 GGCCGCAATCAGAATAACGCCT---TCGTTACTTTCAAAGCCGTCCATTTCAACCAGCAT 8768 Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGC 16055 |||||| | || ||||| |||||||| || | || ||| ||||| | || || Sbjct 8767 CTGGTTGAGTGTCTGTTCGCGTTCATCGTTACC--GCCGCCCATGCCAGCCCCACGGTGG 8710 Query 16056 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGAT-TTTCGCGAGCGAC 16114 || ||||| ||||| || |||||||||| ||||| ||| | |||| | | | Sbjct 8709 CGGCCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTTCTTGCCCTGC 8650 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 | | || | || || || || || |||||||| || ||||| |||||||||| | Sbjct 8649 T-CGAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAGA 8591 Query 16175 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 | ||||| || | || ||| || ||||| | |||||||||||| || || || || || | Sbjct 8590 GCCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGCG 8532 Query 16234 TCTTACCCGTACCTGG 16249 ||||||| || || || Sbjct 8531 TCTTACCTGTGCCCGG 8516 >seq4085 Length=47143 Score = 105 bits (116), Expect = 8e-18 Identities = 254/376 (68%), Gaps = 14/376 (4%) Strand=Plus/Minus Query 15881 CTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 15940 || ||||||||| || || || || || || || || | | ||| || || || Sbjct 25342 CTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGGACGGTTGGT 25283 Query 15941 TGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAG 15997 || || || | || || ||| |||||| ||||| || ||||| || || | Sbjct 25282 GGCCGCAATCAGAATAACGCCT---TCGTTACTTTCAAAGCCGTCCATTTCAACCAGCAT 25226 Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGC 16055 |||||| | || ||||| |||||||| || | || ||| ||||| | || || Sbjct 25225 CTGGTTGAGTGTCTGTTCGCGTTCATCGTTACC--GCCGCCCATGCCAGCCCCACGGTGG 25168 Query 16056 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGAT-TTTCGCGAGCGAC 16114 || ||||| ||||| || |||||||||| ||||| ||| | |||| | | | Sbjct 25167 CGGCCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTTCTTGCCCTGC 25108 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 | | || | || || || || || |||||||| || ||||| |||||||||| | Sbjct 25107 T-CGAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAGA 25049 Query 16175 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 | ||||| || | || ||| || ||||| | |||||||||||| || || || || || | Sbjct 25048 GCCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGCG 24990 Query 16234 TCTTACCCGTACCTGG 16249 ||||||| || || || Sbjct 24989 TCTTACCTGTGCCCGG 24974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620700274868880