Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5214 145 9e-30 seq5078 102 1e-16 seq4086 98.7 1e-15 seq4085 98.7 1e-15 seq5074 86.0 7e-12 seq5021 86.0 7e-12 seq4667 82.4 9e-11 >seq5214 Length=3698012 Score = 145 bits (160), Expect = 9e-30 Identities = 303/437 (69%), Gaps = 16/437 (4%) Strand=Plus/Plus Query 109401 CTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCAT 109460 ||| | ||| ||||| ||||| || || ||||| ||||| ||||| | ||| | || || Sbjct 3420236 CTTTGTGCGCAGATAGTACATGCCGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAAT 3420295 Query 109461 TGAAGAGAGTTTGGAA-AGTGTCGGACTCT-CCATAAACAAGTTCATCGACTGAGACTGA 109518 || | |||||| ||| |||| |||| ||| | | ||| | ||||||| || Sbjct 3420296 GGACGTCAGTTTGCCGTAGT-TCGG-CTCTGCCACATGAATGTTGAACGACTGACTTTGG 3420353 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAG 109578 |||||||| ||||||||| || ||||| | || | |||| | |||||||| Sbjct 3420354 TCGATGAACGCACCACGATCTGCGGCCATTTTAATTGTGGACTTCACGGAGATTTCCCAC 3420413 Query 109579 ACAGTCTTGTACAAATTCTTGATATCATC--GGGAATGTCCACGATGTTTTGAATAGAGC 109636 || |||||||| | || | || | | || ||||||| || | ||||| || || || | Sbjct 3420414 ACGGTCTTGTAAAGAT-CGCGA-ACCTTCTGGGGAATGGCCTCAATGTTCTGGATTGAAC 3420471 Query 109637 CACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTT-TTG 109692 | || || | |||| | | |||||| || | ||| | | | | || || Sbjct 3420472 C-CCTGCTGGAA--ATGATCTGGTTCTTCATATCGTCGTCCCACAAATCCAGCTCGGTTA 3420528 Query 109693 AGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGG 109752 || | ||||||| ||| | ||||||||| |||||||| | || ||| ||| | Sbjct 3420529 AGTCCCTCAACAA-ATGATGGTTGACCACCTGGAATTCACCGGACAGAACGCGCCGGGTG 3420587 Query 109753 TAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAA 109812 || |||||||| |||||||| |||||| | || |||||||| | ||||| |||||||| Sbjct 3420588 TAAATGTTAGTTGTGTAGGGCTCGAAAGATTCGTTGTTGCCCATTATTTGGGCAGTGGAT 3420647 Query 109813 GCTGTGGGCATGGGAGC 109829 || ||||||||||| || Sbjct 3420648 GCCGTGGGCATGGGTGC 3420664 >seq5078 Length=1488007 Score = 102 bits (112), Expect = 1e-16 Identities = 254/379 (67%), Gaps = 14/379 (4%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 || || ||| ||||||||||| ||||| || | || ||||| | ||| |||||| Sbjct 1429853 AACCTGACGGTCGAAACGACCGGGGCGCAGCAATGCCGGGTCAAGCACATCTGGACGGTT 1429794 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAG 11612 || |||||||| | | | ||| |||||| || ||||| ||||| || || Sbjct 1429793 GGTGGCGGCAATCAGGATCACGCCT---TCATTGCTTTCAAAACCATCCATCTCAACCAG 1429737 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC-ACCTGCCGAACGCT 11671 | |||||| | ||||| || |||||||| ||| | || | |||||| ||| | Sbjct 1429736 CATCTGGTTCAGTGTCTGCTCGCGCTCATCATTGCCGC-CACCCATACCTGCACCACGAT 1429678 Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGT--TGGTTGGC-ACGTG 11728 ||| || || ||||| ||||| ||||| | || || || || || || Sbjct 1429677 GGCGACCAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC--- 1429621 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 |||||||||| | ||||| ||||| || ||||||||||||||||| || || |||| Sbjct 1429620 CCTGTTCGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGT 1429561 Query 11789 TTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 | |||| || ||| || ||||| | ||||| || ||||| || || | | Sbjct 1429560 CGGAACCAGAGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACA 1429501 Query 11849 GAGTCTTACCCGTACCAGG 11867 | || ||||| || || || Sbjct 1429500 GGGTTTTACCAGTGCCCGG 1429482 >seq4086 Length=80244 Score = 98.7 bits (108), Expect = 1e-15 Identities = 261/391 (67%), Gaps = 12/391 (3%) Strand=Plus/Minus Query 11490 CACCTGAATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGAC 11549 |||| || || |||||| || || || || || || ||||| || | | || Sbjct 8893 CACCACAACCTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGG 8834 Query 11550 ACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGT 11609 |||||| || || ||||| | | || ||| | | | || || ||||||||||| Sbjct 8833 ACGGTTGGTGGCCGCAATCAGAATAACGCCTTCGTTACTTTCAAAGCCGTCCATTTCAAC 8774 Query 11610 GAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAA 11667 || | |||||||| |||||||| || |||||||| | || ||| || ||| | Sbjct 8773 CAGCATCTGGTTGAGTGTCTGTTCGCGTTCATCGTT--ACCGCCGCCCATGCCAGCCCCA 8716 Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTT--GGTTGGCAC 11725 || | || || |||||||| || || ||||| | || |||||| | || | Sbjct 8715 CGGTGGCGGCCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTT---C 8659 Query 11726 GTGCC-TGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACG 11784 |||| || ||||| | ||||| || || || || |||||||||||||| || || Sbjct 8658 TTGCCCTGCTCGAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACA 8599 Query 11785 AAGTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGC 11843 |||| | | | | || |||| ||| || ||||| | ||||| || || || || || Sbjct 8598 AAGTCAGAGCCGGAAATGGTGAA-GAACGGCACATTGGCTTCACCCGCAATAGCGCGCGC 8540 Query 11844 GAGGAGAGTCTTACCCGTACCAGGTGCACCA 11874 || || |||||||| || || || | |||| Sbjct 8539 CAGCAGCGTCTTACCTGTGCCCGGAGGACCA 8509 >seq4085 Length=47143 Score = 98.7 bits (108), Expect = 1e-15 Identities = 261/391 (67%), Gaps = 12/391 (3%) Strand=Plus/Minus Query 11490 CACCTGAATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGAC 11549 |||| || || |||||| || || || || || || ||||| || | | || Sbjct 25351 CACCACAACCTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGG 25292 Query 11550 ACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGT 11609 |||||| || || ||||| | | || ||| | | | || || ||||||||||| Sbjct 25291 ACGGTTGGTGGCCGCAATCAGAATAACGCCTTCGTTACTTTCAAAGCCGTCCATTTCAAC 25232 Query 11610 GAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCGAA 11667 || | |||||||| |||||||| || |||||||| | || ||| || ||| | Sbjct 25231 CAGCATCTGGTTGAGTGTCTGTTCGCGTTCATCGTT--ACCGCCGCCCATGCCAGCCCCA 25174 Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTT--GGTTGGCAC 11725 || | || || |||||||| || || ||||| | || |||||| | || | Sbjct 25173 CGGTGGCGGCCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTT---C 25117 Query 11726 GTGCC-TGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACG 11784 |||| || ||||| | ||||| || || || || |||||||||||||| || || Sbjct 25116 TTGCCCTGCTCGAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACA 25057 Query 11785 AAGTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGC 11843 |||| | | | | || |||| ||| || ||||| | ||||| || || || || || Sbjct 25056 AAGTCAGAGCCGGAAATGGTGAA-GAACGGCACATTGGCTTCACCCGCAATAGCGCGCGC 24998 Query 11844 GAGGAGAGTCTTACCCGTACCAGGTGCACCA 11874 || || |||||||| || || || | |||| Sbjct 24997 CAGCAGCGTCTTACCTGTGCCCGGAGGACCA 24967 >seq5074 Length=4358836 Score = 86.0 bits (94), Expect = 7e-12 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 167538 ATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGTT 167597 ||||||||| ||| | | ||| ||||| || ||||| | |||||| || ||||||||||| Sbjct 3524640 ATCCTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGCAGATTGATGTT 3524581 Query 167598 ATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGT-TTCAGCGAGGGAAACTTCGC 167656 || | ||| | | | | ||||| || ||||| || || || | || || |||| Sbjct 3524580 GTTTGCGCCCACAAAGTTCTGGGCCAGATTCACGATGGTCATCTGC-AACGAGACCTCGC 3524522 Query 167657 CGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTCAT 167716 |||| ||||| || | | || ||||| | | | | ||| || ||||||| |||| Sbjct 3524521 CGTGATGGTAGGCCGACATCTCTGCCACCGAACCGGATAGCTGGGCGACCTTCACCTCAC 3524462 Query 167717 CTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGACCAT 167776 ||| ||| | | ||| || | |||| |||||||| || || || || |||| Sbjct 3524461 GCTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGGCCGGGCTTCAGCCCAT 3524402 Query 167777 CTGCCACGTGAGCAATTGAGCGCT 167800 | ||| | ||| ||||||| Sbjct 3524401 CGACCAGACTGGGAATAGAGCGCT 3524378 >seq5021 Length=2195682 Score = 86.0 bits (94), Expect = 7e-12 Identities = 301/463 (65%), Gaps = 14/463 (3%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| ||||| || ||||| || || | ||||| | || ||||| || ||||| || Sbjct 137464 ATCTGGCGATCAAAGCGACCCGGTCGCATGAGAGCCTTGTCCAGAATGTCCACACGATTG 137523 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGC 11616 || || || | || || | | || | | || |||||||| || || ||| Sbjct 137524 GTGGCCGCCAGCACAACCACGTTCGTGGTGGTATTAAAGCCGTCCATCTCGACCAGCAGC 137583 Query 11617 TGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGA-ACGCTTCTT 11675 ||||||| ||| | || |||| || | | | | | ||||| ||||||| Sbjct 137584 TGGTTGAGCGTGTTCTCCTGCTCCGAGT-GACCGCCGAAGGTCTTGCCGCCACGCTTCCG 137642 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGT---TGGTTGGCACGTGCCTG 11732 || || ||||| ||||| |||||||| | ||| || || || ||| || ||| Sbjct 137643 GCCCACGGCGTCGATCTCGTCGATGAAGAGGATGCAGGGAGCGTGCTTG---CGCGCCAT 137699 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792 |||| | || || || ||| || ||||| || ||||||||||| | ||| | | Sbjct 137700 GGCGAACATGTCGCGCACTCGCGACGGACCAACGCCCACGAACATCTCGAGGAACT---C 137756 Query 11793 GG--CAGAACACTG-AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849 || | | |||| | ||||| || || || | ||| || ||| |||| || || || Sbjct 137757 GGACCCGGACACCGTGATGAATGGCACGTTCGCCTCGCCGGCGGTGGCCTTGGCCAGCAG 137816 Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACT 11909 || |||||||| || || | ||| | || | ||| || || |||||||| || Sbjct 137817 TGTTTTACCCGTGCCGGGCGGACCGGTCAGCATGGCTCCCTTTGGTATCTTGGCGCCCAG 137876 Query 11910 TCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 | | ||| ||| || ||||| ||||||| ||| | |||| Sbjct 137877 ATCGATGTACTGCTGCGGGTTCTTCAGGAAGTTCACGAACTCC 137919 >seq4667 Length=397774 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 40271 GGGCTCATCCGATATCTCCTTAGGCACTGGCATACGACCCCTTTTGAAATGGTCGATTTC 40330 ||||| ||||| || || | ||||| | ||| | | || ||||| ||| || || Sbjct 73987 GGGCTGATCCGTTACCTGATGCGGCACCGCCATTCCTCACCGTTTGAGATGTGTGAGATC 74046 Query 40331 AAGTTTCACATCAAAATGCCCATCTACATCGCACGACAGCACCTTCGGCACCGCACCGCC 40390 ||||||||| ||||| ||||||||| ||| || || ||| |||| ||||| | ||| Sbjct 74047 AAGTTTCACGTCAAACTGCCCATCTTCATTGCCCGGCAGTGGATTCGCCACCGTATGGCC 74106 Query 40391 AGTGTGAATGAGTTGTCTGCTCGTTACTCC 40420 || ||||| || | ||||| || || ||| Sbjct 74107 AGCGTGAACGAATATTCTGCCCGCTATTCC 74136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588936030616200