Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq30 123 3e-23 seq4667 91.5 2e-13 >seq30 Length=443100 Score = 123 bits (136), Expect = 3e-23 Identities = 338/518 (65%), Gaps = 0/518 (0%) Strand=Plus/Plus Query 154587 AAATGGTTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCA 154646 || ||| | |||| ||| | || | |||| || | || || |||||||| | || | Sbjct 141980 AAGTGGCTGTGTGCTATTAGCGGTTATGATGCTGTTTCCTTCCAACCTAATTCTGGCGCG 142039 Query 154647 CAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGAT 154706 ||||| || |||||||| || | | || | || || ||||| || || || | Sbjct 142040 CAGGGGGAATATGCAGGTTTGCTTGTTATTCGTGCGTATCATCAGGGGCGTGGGGAAGGG 142099 Query 154707 AAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTC 154766 | | | || ||||| || || | || || ||||| || || || ||| ||| Sbjct 142100 CATCGGACAGTTTGTTTAATTCCGGCTTCTGCGCATGGTACCAACCCAGCTTCTGCCCAA 142159 Query 154767 ATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAA 154826 ||||| || ||||| ||||| | || |||||||||| | || ||||| || | || Sbjct 142160 ATGGCGGGCATGAAGGTTGTGGTGGTAAAGTGTGATGCAGGCGGCAACATTGATCTGGAA 142219 Query 154827 GATCTAGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATAC 154886 || | ||||| || | || | ||| ||| | | ||||| || || Sbjct 142220 GACATGCGTGAGAAAATAAAGGCGCATGCGAATGATCTGGCCGCAGTGATGATCACTTAT 142279 Query 154887 CCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGAC 154946 || ||||| ||||| || |||||| ||||| | | || ||| | | || || Sbjct 142280 CCTTCTACTCATGGCGTGTTTGAAGAAAACATGCGTGAAATCTGTGATCTGGTGCACTCA 142339 Query 154947 AATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAA 155006 ||||| ||||||||| | ||||| || || | ||||| ||||| || || ||| Sbjct 142340 GCCGGTGGGCAGGTATATGTGGATGGCGCCAACATGAATGCTCAGGTTGGGCTTGCACGC 142399 Query 155007 CCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCA 155066 || || || |||| ||||| |||| | ||| | |||||||| ||||| |||||| Sbjct 142400 CCGGCAGACTACGGTGGGGATGTTAGTCACTTTAACCTGCATAAAACTTTCTGCATTCCA 142459 Query 155067 CATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| || || || || || | || || || ||||| Sbjct 142460 CATGGTGGCGGTGGCCCGGGTATGGGGCCAATTGGTGT 142497 Score = 109 bits (120), Expect = 6e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 153204 CTTATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTT 153263 || || || ||||| || || || || | ||| | || || ||||| || |||| Sbjct 140576 CTGATCGGGCAAGGGTATTACGGTACGGTGCTGCCCGCTGTTATCCAGCGGAATATTCTG 140635 Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 || ||||| |||||||||| ||||||| || ||||| | || || || || | Sbjct 140636 GAAAATCCGGCTTGGTACACAGCTTACACGCCGTATCAGCCAGAAATCAGCCAAGGGCGT 140695 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 ||||||| | || || | |||||| | || |||||||| ||||| || || || Sbjct 140696 CTGGAAGCCCTGTTGAACTTCCAAACCATGATTACAGAACTGACAGGGTTGGATATCGCC 140755 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 ||| | ||||| ||||||||||||| ||||| |||||||| ||| Sbjct 140756 AACTCTTCTCTGCTAGATGAAGCAACAGCAGCGGCAGAAGCCATG 140800 >seq4667 Length=397774 Score = 91.5 bits (100), Expect = 2e-13 Identities = 223/338 (66%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 154767 ATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAA 154826 ||||| || ||||| ||||| | || |||||||||| | ||| || || || | || Sbjct 183289 ATGGCGGGCATGAAGGTTGTGGTGGTGAAGTGTGATGCCGGTGGCAATATTGATCTGGAA 183348 Query 154827 GATCTAGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATAC 154886 || | | |||||| | | | | ||| ||||| | ||||| || || Sbjct 183349 GACATGCGGGAGAAAGTGACCGCTCACGCGGCTGATCTGTCCGCAGTGATGATCACCTAT 183408 Query 154887 CCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGAC 154946 || || || ||||| || |||||| | ||| | | || ||| | | || ||| | Sbjct 183409 CCCTCCACCCATGGCGTGTTTGAAGAAAGCATGCGTGAAATCTGTGATCTGGTGCATCAG 183468 Query 154947 AATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAA 155006 || || ||||| ||| | ||||| || || | || || ||||| || || || Sbjct 183469 GCCGGAGGGCAGGTGTATGTGGATGGCGCGAACATGAACGCGCAGGTGGGCCTTGCCCGC 183528 Query 155007 CCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCA 155066 || |||| || |||| ||||| | ||| | ||| | || ||||| ||||||||||| Sbjct 183529 CCCGGTGATTACGGTGGCGATGTCAGCCATTTCAACCTGCACAAAACGTTCTGTATTCCG 183588 Query 155067 CATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| || || ||||| ||| | || || || || || Sbjct 183589 CATGGTGGCGGTGGTCCGGGCATGGGGCCAATTGGCGT 183626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579173493171360