Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq30 145 9e-30 seq4667 120 4e-22 >seq30 Length=443100 Score = 145 bits (160), Expect = 9e-30 Identities = 345/519 (66%), Gaps = 2/519 (0%) Strand=Plus/Plus Query 159262 AAATGGTTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCA 159321 || ||| | |||| ||| | || | |||| || | || || |||||||| | || | Sbjct 141980 AAGTGGCTGTGTGCTATTAGCGGTTATGATGCTGTTTCCTTCCAACCTAATTCTGGCGCG 142039 Query 159322 CAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGAT 159381 ||||| || |||||||| || | | || | || || ||||| || || || | Sbjct 142040 CAGGGGGAATATGCAGGTTTGCTTGTTATTCGTGCGTATCATCAGGGGCGTGGGGAAGGG 142099 Query 159382 AAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTG 159441 | | | || ||||| || || | || || ||||| || || || || || || Sbjct 142100 CATCGGACAGTTTGTTTAATTCCGGCTTCTGCGCATGGTACCAACCCAGCTTCTGCCCAA 142159 Query 159442 ATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAA 159501 ||||| || ||||| ||||| | || |||||||||| | |||||||| || | || Sbjct 142160 ATGGCGGGCATGAAGGTTGTGGTGGTAAAGTGTGATGCAGGCGGCAACATTGATCTGGAA 142219 Query 159502 GATCTAGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATAT 159561 || | ||||| || | || | ||| ||| | | ||||| || ||| Sbjct 142220 GACATGCGTGAGAAAATAAAGGCGCATGCGAATGATCTGGCCGCAGTGATGATCACTTAT 142279 Query 159562 CCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCA-TGA 159620 || ||||| ||||| || |||||| |||||| | | || ||| | | || || | | Sbjct 142280 CCTTCTACTCATGGCGTGTTTGAAGAAAACATGCGTGAAATCTGTGATCTGGTGCACTCA 142339 Query 159621 GAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAA 159680 | ||||| ||||||||| | ||||| || || | ||||| ||||| || || ||| Sbjct 142340 GCC-GGTGGGCAGGTATATGTGGATGGCGCCAACATGAATGCTCAGGTTGGGCTTGCACG 142398 Query 159681 ACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCC 159740 || ||||| |||| ||||| |||| | ||| | ||||| || ||||| ||||| Sbjct 142399 CCCGGCAGACTACGGTGGGGATGTTAGTCACTTTAACCTGCATAAAACTTTCTGCATTCC 142458 Query 159741 ACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||| || || || || || | || || |||||||| Sbjct 142459 ACATGGTGGCGGTGGCCCGGGTATGGGGCCAATTGGTGT 142497 Score = 105 bits (116), Expect = 8e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 157879 CTTATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTT 157938 || || || ||||| || || || || | ||| | || || ||||| || |||| Sbjct 140576 CTGATCGGGCAAGGGTATTACGGTACGGTGCTGCCCGCTGTTATCCAGCGGAATATTCTG 140635 Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 || ||||| |||||||||| ||||||| || ||||| | || || || || | Sbjct 140636 GAAAATCCGGCTTGGTACACAGCTTACACGCCGTATCAGCCAGAAATCAGCCAAGGGCGT 140695 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 ||||||| | || || | |||||| | || |||||||| ||||| | || || Sbjct 140696 CTGGAAGCCCTGTTGAACTTCCAAACCATGATTACAGAACTGACAGGGTTGGATATCGCC 140755 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGTTAGC 158111 ||| | ||||| ||||||||||||| ||||| |||||||| ||| ||| || Sbjct 140756 AACTCTTCTCTGCTAGATGAAGCAACAGCAGCGGCAGAAGCCATGGCGTTGGC 140808 >seq4667 Length=397774 Score = 120 bits (132), Expect = 4e-22 Identities = 260/389 (67%), Gaps = 0/389 (0%) Strand=Plus/Plus Query 159391 GTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGG 159450 || ||| |||| || | || || || || || || || || || || |||||| || Sbjct 183238 GTGTGTCTGATTCCGGCCTCCGCCCACGGCACCAACCCGGCCTCCGCCCAGATGGCGGGC 183297 Query 159451 ATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAG 159510 ||||| ||||| | || |||||||||| | |||||| || || | |||| | | Sbjct 183298 ATGAAGGTTGTGGTGGTGAAGTGTGATGCCGGTGGCAATATTGATCTGGAAGACATGCGG 183357 Query 159511 AAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACA 159570 |||||| | | | | ||| ||||| | ||||| || ||||| || || Sbjct 183358 GAGAAAGTGACCGCTCACGCGGCTGATCTGTCCGCAGTGATGATCACCTATCCCTCCACC 183417 Query 159571 CATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGT 159630 ||||| || |||||| || ||| | | || ||| | | || ||| || || || Sbjct 183418 CATGGCGTGTTTGAAGAAAGCATGCGTGAAATCTGTGATCTGGTGCATCAGGCCGGAGGG 183477 Query 159631 CAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGAC 159690 ||||| ||| | ||||| || || | || || ||||| || || || || |||| Sbjct 183478 CAGGTGTATGTGGATGGCGCGAACATGAACGCGCAGGTGGGCCTTGCCCGCCCCGGTGAT 183537 Query 159691 TATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGT 159750 || |||| ||||| | ||| | ||| | || || || ||||||||||| ||||| || Sbjct 183538 TACGGTGGCGATGTCAGCCATTTCAACCTGCACAAAACGTTCTGTATTCCGCATGGTGGC 183597 Query 159751 GGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 || ||||| ||| | || || ||||| || Sbjct 183598 GGTGGTCCGGGCATGGGGCCAATTGGCGT 183626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588011293375440