Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq4241 105 8e-18 seq5078 89.7 6e-13 seq4086 89.7 6e-13 seq4085 89.7 6e-13 seq5080 87.8 2e-12 >seq4241 Length=507456 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 17789 GGGCGAATAGCTCAGCGGTAGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCGATCC 17848 |||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 464632 GGGCGATTAGCTCAGCGGTAGAGCGTCTCGTTTACACCGAGATGGTCGGGGGTTCGATCC 464691 Query 17849 CCTCTTCGCCCAC 17861 |||| |||||||| Sbjct 464692 CCTCATCGCCCAC 464704 >seq5078 Length=1488007 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 22401 TGCCCTTATAGCTCAGTGGTAGAGCAACGCTTTTGTAAAGCGTAGGTCGTTGGTTCAAAT 22460 |||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| Sbjct 1444901 TGCCCTTATAGCTCAGTGGTAGAGCAACCGCCTTGTAAGCGGTAGGTCGTGGGTTCAAAT 1444842 Query 22461 CCGACTGGGGGC 22472 || ||||||||| Sbjct 1444841 CCTACTGGGGGC 1444830 >seq4086 Length=80244 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 22401 TGCCCTTATAGCTCAGTGGTAGAGCAACGCTTTTGTAAAGCGTAGGTCGTTGGTTCAAAT 22460 |||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| Sbjct 24820 TGCCCTTATAGCTCAGTGGTAGAGCAACCGCCTTGTAAGCGGTAGGTCGTGGGTTCAAAT 24761 Query 22461 CCGACTGGGGGC 22472 || ||||||||| Sbjct 24760 CCTACTGGGGGC 24749 >seq4085 Length=47143 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 22401 TGCCCTTATAGCTCAGTGGTAGAGCAACGCTTTTGTAAAGCGTAGGTCGTTGGTTCAAAT 22460 |||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| Sbjct 41278 TGCCCTTATAGCTCAGTGGTAGAGCAACCGCCTTGTAAGCGGTAGGTCGTGGGTTCAAAT 41219 Query 22461 CCGACTGGGGGC 22472 || ||||||||| Sbjct 41218 CCTACTGGGGGC 41207 >seq5080 Length=249237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 17789 GGGCGAATAGCTCAGCGGTAGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCGATCC 17848 |||| | ||||||||||||||||| ||||||||||||||| |||||| |||||||||| Sbjct 211009 GGGCAATTAGCTCAGCGGTAGAGCGTCTCGTTTACACCGAGATGGTCGGCGGTTCGATCC 211068 Query 17849 CCTCTTCGCCCAC 17861 | || | |||||| Sbjct 211069 CGTCATTGCCCAC 211081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560569955739600