Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5277 154 3e-32 seq5214 125 2e-23 >seq5277 Length=7425378 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||| || || || ||||| |||| |||||| | |||||||| Sbjct 1193449 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTC 1193390 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||| || ||||||||||| || || || || ||||||||||| || || ||||| || Sbjct 1193389 CAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTG 1193330 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| ||| |||||||||||||| || ||| ||| || || || || | || || Sbjct 1193329 AATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTT 1193270 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || |||||||| | |||||| Sbjct 1193269 ACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||| || || || ||||| |||| |||||| | ||||| || Sbjct 1193905 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTC 1193846 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || |||||||| || || || || || || || ||||| |||||||| || ||||| || Sbjct 1193845 CAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 1193786 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| ||| || ||||||||||| || || || ||||||||||| | ||||| Sbjct 1193785 AATTTTGGCCTTTACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGGGTGATGGTCTT 1193726 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || || ||||| | ||||| Sbjct 1193725 GCCAGTTAAGGTCTTCACGAAGATCTGCAT 1193696 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || || ||||| || ||||| |||| || |||| ||||| || ||||| Sbjct 1193671 GTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCCTCAAGCTG 1193612 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || || || | ||| || || ||||| |||||||| || ||||| ||||| || Sbjct 1193611 CTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTT 1193552 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||||||||| || ||| ||| || || || || | || ||||| || Sbjct 1193551 GGCCTTCACATTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTTCCGGT 1193492 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | |||||| Sbjct 1193491 TAAGGTCTTCACGAAGATTTGCAT 1193468 Score = 131 bits (144), Expect = 4e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCAT 194986 ||| || | ||| |||||||||||||| || || ||||| || | |||| || | |||| Sbjct 1194136 CAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAG-GTACGGCCAT 1194078 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 | || || |||||||| ||||| || || || || || ||||| |||||||| ||||||| Sbjct 1194077 CCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCTTTGT 1194018 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106 | || || || ||| |||||||||||||| || || || || || || || | | Sbjct 1194017 CCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAACCTCCAGAGTTATGG 1193958 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || |||| || || ||||| | |||||| Sbjct 1193957 TTTTACCGGTCAGGGTCTTCACGAAGATTTGCAT 1193924 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || || || || || |||||||||| ||||| | || || || | ||| Sbjct 1194355 GTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCCTCCAACTG 1194296 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | || || |||||||| ||||| || || ||||| || ||||| Sbjct 1194295 CTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATTTT 1194236 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || |||||||||||||| || ||||| || || |||| ||||| || || Sbjct 1194235 AGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACCTCCAGTGTAATGGTCTTGCCAGT 1194176 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 1194175 TAGGGTCTTCACGAAGATTTGCAT 1194152 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| | ||| ||||| || || || |||||||| | | || | ||||| Sbjct 1193224 CAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGACAACGTACGGCCATC 1193165 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || || |||||||| || || || || || || || ||||| || |||||||| ||||| Sbjct 1193164 CTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTC 1193105 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || ||| |||||||||||||| || ||| ||| || || || || | || Sbjct 1193104 CTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGT 1193045 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||| || || ||||| | ||||| Sbjct 1193044 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012 >seq5214 Length=3698012 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||||||||| || ||||| || || || | || || | |||||||| ||||| Sbjct 3523171 GTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 3523112 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||||||||| ||||||||||| ||||| || Sbjct 3523111 CTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTT 3523052 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || || || || ||||| ||| || ||||| || | ||||| || || Sbjct 3523051 GGCTTTAACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGT 3522992 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 3522991 GAGGGTCTTAACGAAGATCTGCAT 3522968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109404425500043