Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5277 122 6e-23 seq4488 104 2e-17 seq5214 102 5e-17 seq4172 89.7 3e-13 >seq5277 Length=7425378 Score = 122 bits (134), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| ||||||||||||||| || || ||||| | || |||| || Sbjct 1192993 AACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCTTC 1192934 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || |||||||| || ||||| ||||| ||| | || | ||||||||||| Sbjct 1192933 AAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 1192874 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| || || || || |||| || | ||| || || | || ||||| Sbjct 1192873 AATCTTGGCCTTCAC--ATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTC 1192816 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || || | |||||||||||||||||||| || Sbjct 1192815 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1192781 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| || || ||||| ||||| || ||| ||||| |||| || Sbjct 1193676 ACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCCTCA 1193617 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || | ||| ||||| ||| | || | ||||||||||| | Sbjct 1193616 AGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGA 1193557 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | ||| | ||||| || | || ||||||| Sbjct 1193556 ATCTTGGCCTTCAC--ATTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTT 1193499 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || | |||||||| ||||| |||||| Sbjct 1193498 TTCCGGTTAAGGTCTTCACGAAGATTTGCATA 1193467 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | ||| |||||||| ||||| |||||||| | | | || |||| Sbjct 1194136 CAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATC 1194077 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||| || || || || || || || || ||||| ||| | || | ||||| ||||| Sbjct 1194076 CTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCTTTGTC 1194017 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || ||| | || | ||| || |||||| || | |||||||| Sbjct 1194016 CTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAACCTCCAGAGTTATGGT 1193957 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || || |||||||| ||||| ||||| Sbjct 1193956 TTTACCGGTCAGGGTCTTCACGAAGATTTGCAT 1193924 Score = 102 bits (112), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||| ||||| ||||| | || |||| || Sbjct 1193905 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTC 1193846 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||| || || || ||||| || || || ||||| ||| | || | ||||||||||| Sbjct 1193845 CAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 1193786 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || || || || || || | ||| || |||||| || | ||| ||||| Sbjct 1193785 AATTTTGGCCTTTAC--ATTCTCAATGGTATCAGAGGGCTCAACTTCAAGGGTGATGGTC 1193728 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || | |||||||| ||||||||||| Sbjct 1193727 TTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 1193696 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||| ||||| ||||| | || |||| || Sbjct 1193449 AACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTC 1193390 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||||||| || || || || || ||||| ||| | || | ||||||||||| Sbjct 1193389 CAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTG 1193330 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || || ||| | || | ||| | ||||| || | || |||||||| Sbjct 1193329 AATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTT 1193270 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || ||||| || ||||| ||||| Sbjct 1193269 ACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | || || ||||| ||||| || ||||| | | || |||| Sbjct 1193224 CAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGACAACGTACGGCCATC 1193165 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||| || || || ||||| || || || ||||| ||| | || | || |||||||| Sbjct 1193164 CTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTC 1193105 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || ||| | || | ||| | ||||| || | || ||||| Sbjct 1193104 CTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGT 1193045 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || |||||||| ||||||||||| Sbjct 1193044 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012 >seq4488 Length=533506 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || |||| |||||||| || ||||| || Sbjct 135495 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAG 135436 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| |||||| || || || Sbjct 135435 ATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTAGCCTTCAC--AT 135378 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | ||| || || | ||| ||||| || || ||||| || |||| Sbjct 135377 TCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCA 135318 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 135317 CAAAGATCTGCAT 135305 >seq5214 Length=3698012 Score = 102 bits (112), Expect = 5e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||||||||||||||| || ||| | || |||| ||| Sbjct 3523176 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 3523117 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||| ||| | || | || || ||||| | Sbjct 3523116 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGA 3523057 Query 34893 ATCTTCTGTTTGACGGATGCTATCG-ATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| ||| || | | || | || | ||| || || || | || ||||| || Sbjct 3523056 ATCTTGGCTTTAACATTTTCGATAGTATCCGACGG-TTCGACCTCAAGAGTGATGGTCTT 3522998 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||||| ||||| || ||||||||||| || Sbjct 3522997 GCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 3522965 >seq4172 Length=1033301 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | || |||||| || | ||| || || || ||||| ||||| || Sbjct 906968 CCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 907027 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | ||| |||| |||||||| |||||||| || || | || ||||| ||| | || Sbjct 907028 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGG 907087 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| || ||| | || | || | |||||| Sbjct 907088 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACC 907147 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | || ||||| || || || | |||||| || ||||||||||| Sbjct 907148 TCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324612120313512