Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5277 100 2e-15 >seq5277 Length=7425378 Score = 100 bits (110), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | ||||||||| || || || ||||| || | ||||| | Sbjct 1193457 AGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGA 1193398 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| | |||||||| || || || || | |||||||| ||||||||||| || Sbjct 1193397 CCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCCTCC 1193338 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 || || |||||||| || || |||||| ||||||| | | || ||||| Sbjct 1193337 TTGTCCTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTG 1193278 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||||| ||||| || || ||||| |||||||| Sbjct 1193277 ATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 100 bits (110), Expect = 2e-15 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || | |||||||| ||| ||||| || ||||| || | ||| |||| Sbjct 1193685 AGACGGAGGACCAAGTGAAGGGTCGATTCCTTTTGG--ATGTTGTAGTCGGATAGGGTTC 1193628 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | ||| ||||| || || ||||||||||| | || |||||||| || ||||| || | Sbjct 1193627 GTCCATCCTCAAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCCT 1193568 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 | || || ||||| || || || |||||| ||||||| | | || |||| Sbjct 1193567 CCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGTTCAACCTCCAGAG 1193508 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | | ||||| || || | || || ||||| ||||||||| Sbjct 1193507 TGATGGTTTTTCCGGTTAAGGTCTTCACGAAGATTTGCATA 1193467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029008889995210