Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq5080 87.8 4e-13 seq5079 87.8 4e-13 >seq5080 Length=249237 Score = 87.8 bits (96), Expect = 4e-13 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872 ||| ||| | ||| ||||||||||| ||| || || ||||||||||| |||||||||||| Sbjct 80075 TGGCGCGCCCTGCTGGATTCGAACCAGCGACCCACAGCTTAGAAGGCTGTTGCTCTATCC 80016 Query 2873 AACTGAGCTAA 2883 ||||||||||| Sbjct 80015 AACTGAGCTAA 80005 >seq5079 Length=1084440 Score = 87.8 bits (96), Expect = 4e-13 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872 ||| ||| | ||| ||||||||||| ||| || || ||||||||||| |||||||||||| Sbjct 782269 TGGCGCGCCCTGCTGGATTCGAACCAGCGACCCACAGCTTAGAAGGCTGTTGCTCTATCC 782328 Query 2873 AACTGAGCTAA 2883 ||||||||||| Sbjct 782329 AACTGAGCTAA 782339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123659227252908