Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq5074 224 8e-54 seq4674 102 7e-17 >seq5074 Length=4358836 Score = 224 bits (248), Expect = 8e-54 Identities = 372/532 (70%), Gaps = 10/532 (2%) Strand=Plus/Plus Query 29752 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 29811 || ||| ||| |||| || ||||| ||| | ||| ||||| ||||||||| ||| Sbjct 1652280 TTGATCAACAGCTTGGGGAATGGTCTCGGCGTTCGCTCCAGCTGCTCCTTCAGCGGCTCC 1652339 Query 29812 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29871 ||||||| |||||||||||| | ||| |||| |||||| ||||| || || || | || Sbjct 1652340 ACGTGATTCAGGTAGACGTGCGTGTCGCCCATGGTGTGCACAAAGTCGCCTGGCTTCAGA 1652399 Query 29872 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 29931 || || || || || ||||||| ||||| || | |||| ||||||||| ||||| || Sbjct 1652400 CCCGTTACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACG 1652459 Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGC-TC-- 29988 || || |||||||| | ||| ||||| ||||| || ||||| || ||| ||| || Sbjct 1652460 CCCAGACCCATGTCGGCGCTCCTTTGGTACAGCTGGCAGGAGAGTTCGCCG-CGCGTCTG 1652518 Query 29989 ----ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044 || || ||||| || | ||| ||||| || || ||||| | ||| Sbjct 1652519 GGAGACATAGAACTGCGCCAGGCAGTGACACGGCGGCAGGGCCATTTTCGGAATGTCCGA 1652578 Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104 || ||||| || ||| ||||||||||||||| || || |||| |||| ||| | Sbjct 1652579 TGGATTCCATGCCGACATGATGATGCGCCTGTCCGAGGGATTATTCCGGATGGTGTCGAT 1652638 Query 30105 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACT 30163 | | | ||| |||||| | ||| | || | |||||| | | || || | |||| Sbjct 1652639 CACCTGTCGCAACTGATCGATGCCCTTTCCAGTGTAGTCGTCATCGCAGGTGC-CATACT 1652697 Query 30164 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30223 | ||||| || |||| ||||||||| ||||||||||| ||||| ||||| | | | | Sbjct 1652698 CCGCTCCAAAGTGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCTCCAACGGCACGCT 1652757 Query 30224 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 30275 | | ||| |||||||| || || |||| | ||| |||||||||| Sbjct 1652758 CCGTGTGCCCCAGCTTGTCCAGGAACTCCCTGGTGCTGTTCCCGTCCCAGAT 1652809 >seq4674 Length=694708 Score = 102 bits (112), Expect = 7e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 48423 TTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACG 48482 || || || | ||||||||||||||| | ||| || ||||||||| ||||| || || Sbjct 523894 TTGAAGAGCACGACGCCGAGGTTGCCGCGGTAATCCTCGTCCACCACGCCGGCGCCCACA 523953 Query 48483 TCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGG 48542 || || || || |||| |||||| || || | ||||| || | ||||||| |||| Sbjct 523954 TCGATGAAGTTCTTCACGGCCAGTCCAGAGCGTGGAGCAACGCGGCCGTAGGAGCCCTCC 524013 Query 48543 GGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAGGGGACCAC 48598 || | || ||| |||||| ||||| || | |||| |||| || ||| ||||| Sbjct 524014 GGAACCTGCACCTGCAGGTCGGTCTTCACAATGGCCTTGCCCCGGGCGGGAACCAC 524069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408590563433417