Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq5074 224 8e-54
seq4674 102 7e-17
>seq5074
Length=4358836
Score = 224 bits (248), Expect = 8e-54
Identities = 372/532 (70%), Gaps = 10/532 (2%)
Strand=Plus/Plus
Query 29752 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 29811
|| ||| ||| |||| || ||||| ||| | ||| ||||| ||||||||| |||
Sbjct 1652280 TTGATCAACAGCTTGGGGAATGGTCTCGGCGTTCGCTCCAGCTGCTCCTTCAGCGGCTCC 1652339
Query 29812 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29871
||||||| |||||||||||| | ||| |||| |||||| ||||| || || || | ||
Sbjct 1652340 ACGTGATTCAGGTAGACGTGCGTGTCGCCCATGGTGTGCACAAAGTCGCCTGGCTTCAGA 1652399
Query 29872 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 29931
|| || || || || ||||||| ||||| || | |||| ||||||||| ||||| ||
Sbjct 1652400 CCCGTTACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACG 1652459
Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGC-TC-- 29988
|| || |||||||| | ||| ||||| ||||| || ||||| || ||| ||| ||
Sbjct 1652460 CCCAGACCCATGTCGGCGCTCCTTTGGTACAGCTGGCAGGAGAGTTCGCCG-CGCGTCTG 1652518
Query 29989 ----ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044
|| || ||||| || | ||| ||||| || || ||||| | |||
Sbjct 1652519 GGAGACATAGAACTGCGCCAGGCAGTGACACGGCGGCAGGGCCATTTTCGGAATGTCCGA 1652578
Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104
|| ||||| || ||| ||||||||||||||| || || |||| |||| ||| |
Sbjct 1652579 TGGATTCCATGCCGACATGATGATGCGCCTGTCCGAGGGATTATTCCGGATGGTGTCGAT 1652638
Query 30105 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACT 30163
| | | ||| |||||| | ||| | || | |||||| | | || || | ||||
Sbjct 1652639 CACCTGTCGCAACTGATCGATGCCCTTTCCAGTGTAGTCGTCATCGCAGGTGC-CATACT 1652697
Query 30164 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30223
| ||||| || |||| ||||||||| ||||||||||| ||||| ||||| | | | |
Sbjct 1652698 CCGCTCCAAAGTGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCTCCAACGGCACGCT 1652757
Query 30224 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGAT 30275
| | ||| |||||||| || || |||| | ||| ||||||||||
Sbjct 1652758 CCGTGTGCCCCAGCTTGTCCAGGAACTCCCTGGTGCTGTTCCCGTCCCAGAT 1652809
>seq4674
Length=694708
Score = 102 bits (112), Expect = 7e-17
Identities = 128/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 48423 TTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACG 48482
|| || || | ||||||||||||||| | ||| || ||||||||| ||||| || ||
Sbjct 523894 TTGAAGAGCACGACGCCGAGGTTGCCGCGGTAATCCTCGTCCACCACGCCGGCGCCCACA 523953
Query 48483 TCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGG 48542
|| || || || |||| |||||| || || | ||||| || | ||||||| ||||
Sbjct 523954 TCGATGAAGTTCTTCACGGCCAGTCCAGAGCGTGGAGCAACGCGGCCGTAGGAGCCCTCC 524013
Query 48543 GGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAGGGGACCAC 48598
|| | || ||| |||||| ||||| || | |||| |||| || ||| |||||
Sbjct 524014 GGAACCTGCACCTGCAGGTCGGTCTTCACAATGGCCTTGCCCCGGGCGGGAACCAC 524069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408590563433417
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |