Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq4427 109 1e-18 seq5078 107 3e-18 >seq4427 Length=76274 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 23073 GCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGT 23132 ||||| |||||| ||||||||||| |||||||| || || || ||||| || ||||| || Sbjct 33435 GCCTTCCCATTCGGGTTCCAGCGGTGTGACGTTCACAATAATACCGCAGCGGGCATAGGT 33494 Query 23133 CGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTT 23192 |||||||| ||||| | || | || || ||||| ||| ||| | ||| |||| Sbjct 33495 GGATTTGCCAAGGCACACCACCAGCACATCCCGCGGGATGCGGAAATATTCAATGGTGTG 33554 Query 23193 TGCCAGTGCGAAACTGTTCGGCGGAATGAT 23222 ||||| | || ||||| ||||||||||| Sbjct 33555 GGCCAGCACAAAGCTGTTGGGCGGAATGAT 33584 >seq5078 Length=1488007 Score = 107 bits (118), Expect = 3e-18 Identities = 192/277 (69%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 22951 CGGTCGGCGTAGGAAACTTCGCACT--CTTCATCAGATTCAAAGAACAGAATTTGTGCGC 23008 || || |||||| ||||||||| ||| ||| | ||||||||||| || || Sbjct 927829 CGATCTGCGTAGCTTACTTCGCACGGGCTT--TCACCCTTAAAGAACAGAAACTG---GC 927775 Query 23009 AA---CCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAG 23065 || ||||| || || || |||| || || ||||| ||| | ||| | | Sbjct 927774 AAATGCCTTCATTGGCATAAATGCGTGCAGGCAACGGCGTGGTGTTGCTGATCTCGATCG 927715 Query 23066 TAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCG 23125 | | | |||| |||||||||||| | || |||||||| ||||| |||||||| |||| Sbjct 927714 TTACCTGTCCTTCCCATTCTGGTTCTAAAGGGGTGACGTTGACGATAATGCCGCAGCGCG 927655 Query 23126 CATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCG 23185 |||| || ||||| || | ||| | || | ||| |||||||| || ||||| ||| Sbjct 927654 CATAGGTGGATTTACCCAAGCATACTACCAGTACATCACGCGGGATACGGAAGTATTCAA 927595 Query 23186 GCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT 23222 ||| | ||||| | || ||||| |||||||| || Sbjct 927594 TCGTATGGGCCAGCACAAAGCTGTTGGGCGGAATAAT 927558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897532687054320