Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_017972.1
Length=280538
Score E
Sequences producing significant alignments: (Bits) Value
seq4427 109 1e-18
seq5078 107 3e-18
>seq4427
Length=76274
Score = 109 bits (120), Expect = 1e-18
Identities = 114/150 (76%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 23073 GCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGT 23132
||||| |||||| ||||||||||| |||||||| || || || ||||| || ||||| ||
Sbjct 33435 GCCTTCCCATTCGGGTTCCAGCGGTGTGACGTTCACAATAATACCGCAGCGGGCATAGGT 33494
Query 23133 CGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTT 23192
|||||||| ||||| | || | || || ||||| ||| ||| | ||| ||||
Sbjct 33495 GGATTTGCCAAGGCACACCACCAGCACATCCCGCGGGATGCGGAAATATTCAATGGTGTG 33554
Query 23193 TGCCAGTGCGAAACTGTTCGGCGGAATGAT 23222
||||| | || ||||| |||||||||||
Sbjct 33555 GGCCAGCACAAAGCTGTTGGGCGGAATGAT 33584
>seq5078
Length=1488007
Score = 107 bits (118), Expect = 3e-18
Identities = 192/277 (69%), Gaps = 10/277 (4%)
Strand=Plus/Minus
Query 22951 CGGTCGGCGTAGGAAACTTCGCACT--CTTCATCAGATTCAAAGAACAGAATTTGTGCGC 23008
|| || |||||| ||||||||| ||| ||| | ||||||||||| || ||
Sbjct 927829 CGATCTGCGTAGCTTACTTCGCACGGGCTT--TCACCCTTAAAGAACAGAAACTG---GC 927775
Query 23009 AA---CCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAG 23065
|| ||||| || || || |||| || || ||||| ||| | ||| | |
Sbjct 927774 AAATGCCTTCATTGGCATAAATGCGTGCAGGCAACGGCGTGGTGTTGCTGATCTCGATCG 927715
Query 23066 TAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCG 23125
| | | |||| |||||||||||| | || |||||||| ||||| |||||||| ||||
Sbjct 927714 TTACCTGTCCTTCCCATTCTGGTTCTAAAGGGGTGACGTTGACGATAATGCCGCAGCGCG 927655
Query 23126 CATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCG 23185
|||| || ||||| || | ||| | || | ||| |||||||| || ||||| |||
Sbjct 927654 CATAGGTGGATTTACCCAAGCATACTACCAGTACATCACGCGGGATACGGAAGTATTCAA 927595
Query 23186 GCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT 23222
||| | ||||| | || ||||| |||||||| ||
Sbjct 927594 TCGTATGGGCCAGCACAAAGCTGTTGGGCGGAATAAT 927558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 897532687054320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |