Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq5277 152 4e-32 seq4488 107 2e-18 seq4172 100 2e-16 >seq5277 Length=7425378 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || ||||||||||| || || || || ||||| |||| | ||| | | Sbjct 1193911 ACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACC 1193852 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||||||||| ||||| || | |||||| ||||| || |||||||| || || Sbjct 1193851 ATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTT 1193792 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || |||||||| |||||| | || | || ||||| | || |||||||| |||| Sbjct 1193791 GTCCTGAATTTTGGCCTTTACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGGGTGAT 1193732 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || ||||| ||||| || || || || ||||||||| |||||||| Sbjct 1193731 GGTCTTGCCAGTTAAGGTCTTCACGAAGATCTGCATGCCACCGCGAAGA 1193683 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | || ||| | || || |||||||| ||||| || || || |||||||||| Sbjct 1194380 TTCCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGG 1194321 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | || ||||| ||||| || ||||| ||||||||||| || || || | Sbjct 1194320 ACAGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGG 1194261 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| || || || || || ||||| || ||| | || | |||||||| | |||| Sbjct 1194260 GAATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCA 1194201 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | || || || | || ||||| |||| || || || || || |||||| Sbjct 1194200 CCTCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCATG 1194151 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | ||| || ||||||||||| || || || || ||||| |||| Sbjct 1193466 CCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 1193407 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| ||||| || || ||||| || || | |||||| ||||| || ||| Sbjct 1193406 AGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGA 1193347 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || |||||||| || || | || | || ||||| | ||| || Sbjct 1193346 ATTCCCTCCTTGTCCTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACC 1193287 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||||| ||||| ||||| | || ||||| || || |||||| Sbjct 1193286 TCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCATG 1193239 >seq4488 Length=533506 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || || || || || ||||| || | | || | |||| |||| || Sbjct 135508 ATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCCTCCAGCTG 135449 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| |||||| ||||| || |||||||| || || || ||||| || Sbjct 135448 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTT 135389 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||||| || | ||||| || | |||| || |||||||| Sbjct 135388 AGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGT 135329 Query 101446 TAAAGTTTTTACAAATATCTGCATGGT 101472 | ||||| ||||| ||||||||||| Sbjct 135328 GAGGGTTTTCACAAAGATCTGCATGGT 135302 >seq4172 Length=1033301 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| ||||| | || || || ||||| || ||||| |||| Sbjct 906968 CCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 907027 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||| ||||| || || || ||||||||||| ||||| || || Sbjct 907028 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGG 907087 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || || || || || | || | || || || | || || Sbjct 907088 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACC 907147 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | ||||| || |||||||| ||||| || || || ||||||||| Sbjct 907148 TCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCATG 907195 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || |||||||| ||||| || || || || ||||||| Sbjct 907424 CCTCCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGAC 907483 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | || |||| ||||| || || || ||||||||||| ||||| || ||| Sbjct 907484 AAAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 907543 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || || || || ||| | || | || || || | || || Sbjct 907544 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACC 907603 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| || ||||| || ||||| || || || || ||||| Sbjct 907604 TCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCAT 907650 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | || || || || || || ||||| |||| | ||| | |||| ||| Sbjct 906758 ACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 906817 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || || || ||||| || || || Sbjct 906818 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGG 906877 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | || || || | || || || | ||||| || ||| Sbjct 906878 ATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACCTCCAAAGTGATGGTCTTG 906937 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||| || ||||| ||||||||| Sbjct 906938 CCTGTGAGAGTCTTGACAAAGATCTGCATG 906967 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || ||||| | || || || || || || || ||||||| Sbjct 907196 CCTCCACGGAGACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGAC 907255 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||||| || || || ||||||||||| ||||| || ||| Sbjct 907256 AAGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 907315 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || || || || ||| | || | || || || | || || Sbjct 907316 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACC 907375 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | ||||| || ||||| || | ||| || || || ||||||||| Sbjct 907376 TCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 907423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396252179868153