Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4674 168 5e-37 seq5277 129 4e-25 seq4488 113 3e-20 seq4172 96.9 3e-15 >seq4674 Length=694708 Score = 168 bits (186), Expect = 5e-37 Identities = 276/395 (70%), Gaps = 6/395 (2%) Strand=Plus/Plus Query 9001 CCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTAACCTCTA-- 9058 ||||| || || || ||| |||| ||||| | |||||| || | || || | | Sbjct 523753 CCGGTGGAGCCGAATCCTGCCTCGCCGCGTTCGGTGTCC-TCCAGTTTGT--CCACGAGC 523809 Query 9059 -CCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTC 9117 ||||| ||||| ||||| | || ||||| || || || || | || || ||| Sbjct 523810 TCCAGTTCCGGATAGAAGATGCGCTCGCAAATGAACTGGGCGATGCGATCGCCGCGCTTC 523869 Query 9118 ACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCC 9177 || | ||||| ||| || |||||||| ||||| || || | ||| || | ||||||| Sbjct 523870 ACCTCGAAGTCCACGTCCGAGTGATTGAAGAGCACGACGCCGAGGTTGCCGCGGTAATCC 523929 Query 9178 TCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGC 9237 || || | ||| || || ||||| |||||||||| ||| || || ||||||||||| || Sbjct 523930 TCGTCCACCACGCCGGCGCCCACATCGATGAAGTTCTTCACGGCCAGTCCAGAGCGTGGA 523989 Query 9238 GCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCC 9297 || | || |||||| | ||| |||| | |||||| ||| ||||||| | || | || Sbjct 523990 GCAACGCGGCCGTAGGAGCCCTCCGGAACCTGCACCTGCAGGTCGGTCTTCACAATGGCC 524049 Query 9298 TTGCCGTGTTTTGGAATCACGGTGTCGTAGCCGCTCTTGAGATCAAACCCAGCTGCCCTG 9357 ||||| | |||| ||| ||||||| ||||| || || | || || ||| || Sbjct 524050 TTGCCCCGGGCGGGAACCACCAGGTCGTAGGCGCTCCGTAGGTCCACTCCCGCCGCCTTG 524109 Query 9358 TCCGATCCCTTCGTGGGCGCAAAAGCGTTTTCGGT 9392 | |||||| || ||||||| || |||||||| Sbjct 524110 GCGGATCCCCTCACCGGCGCAAGGGCATTTTCGGT 524144 >seq5277 Length=7425378 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||||| ||||| |||||||| || ||| | || | || || Sbjct 1192992 ACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCTTCA 1192933 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| |||||||| ||||||||||| ||||| | ||||| |||||||||||| | Sbjct 1192932 AGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGA 1192873 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||| ||||||| ||||| || || Sbjct 1192872 ATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTCTTG 1192813 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| |||||||| Sbjct 1192812 CCAGTCAAGGTCTTCACAAAGATCTGCAT 1192784 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || ||||| || ||||| || ||||| |||| | || || Sbjct 1193676 ACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCCTCA 1193617 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| |||||||| |||| |||||| ||||| | ||||| |||||||||||| | Sbjct 1193616 AGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGA 1193557 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | || ||||||| || || |||||| Sbjct 1193556 ATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTT 1193497 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || || || || ||||| Sbjct 1193496 CCGGTTAAGGTCTTCACGAAGATTTGCAT 1193468 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||||| || || || || || || || |||||||| || Sbjct 1194378 CCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGAC 1194319 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || |||| ||||||||||| |||||||| |||| ||||| || || | |||| Sbjct 1194318 AGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1194259 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| || || || ||| | | | || || | ||||||| Sbjct 1194258 ATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACC 1194199 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || || | || || || || || ||||| Sbjct 1194198 TCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| |||| || ||||||||||| || || ||| |||||| || || ||||| || || Sbjct 1194151 GCCACCCCGAAGACGCAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGA 1194092 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | || | || |||| |||||||| || || || || ||||| ||||| | ||| Sbjct 1194091 CAAGGTACGGCCATCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGG 1194032 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||| ||||| ||||| || || | | | || || | ||| || Sbjct 1194031 AATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAAC 1193972 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || ||||| || |||| || || || || || ||||| Sbjct 1193971 CTCCAGAGTTATGGTTTTACCGGTCAGGGTCTTCACGAAGATTTGCAT 1193924 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || ||||| || || ||| | ||| | || ||| Sbjct 1193904 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCC 1193845 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||||| ||||| || || ||||| ||||| | ||||| |||||||||||| | Sbjct 1193844 AGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGA 1193785 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || |||||| | | | || || | ||| || || | || || || || Sbjct 1193784 ATTTTGGCCTTTACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGGGTGATGGTCTTG 1193725 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || || || |||||||| Sbjct 1193724 CCAGTTAAGGTCTTCACGAAGATCTGCAT 1193696 >seq4488 Length=533506 Score = 113 bits (124), Expect = 3e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || || ||| || || || ||||| || || || | ||| Sbjct 135522 AGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGA 135463 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||| Sbjct 135462 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 135403 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||||||||||| || Sbjct 135402 TTGTCCTGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTG 135343 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || || | ||||| ||||| |||||||| ||| Sbjct 135342 ATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCATGGTG 135301 >seq4172 Length=1033301 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||||| | ||| ||| ||||| || ||||| || || ||| | || Sbjct 906977 AGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGT 907036 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || |||| ||||| ||||| | ||| | |||||| Sbjct 907037 CCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 907096 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 907097 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTG 907156 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || || || |||||||| Sbjct 907157 ATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || || || || || || || ||||| || | | | || Sbjct 907433 AGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGACAAAGTACGT 907492 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| |||||| Sbjct 907493 CCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCC 907552 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||||| || Sbjct 907553 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTG 907612 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||||||| || || ||||| ||||| Sbjct 907613 ATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCAT 907650 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | ||| ||| || || || || ||||| || | | || Sbjct 907205 AGACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTACGT 907264 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || |||| ||||| ||||| | ||||| |||||| Sbjct 907265 CCATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCC 907324 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||||| || Sbjct 907325 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTG 907384 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || || || |||||||| Sbjct 907385 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 907422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380912394906567