Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq4674 168 5e-37
seq5277 129 4e-25
seq4488 113 3e-20
seq4172 96.9 3e-15
>seq4674
Length=694708
Score = 168 bits (186), Expect = 5e-37
Identities = 276/395 (70%), Gaps = 6/395 (2%)
Strand=Plus/Plus
Query 9001 CCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTAACCTCTA-- 9058
||||| || || || ||| |||| ||||| | |||||| || | || || | |
Sbjct 523753 CCGGTGGAGCCGAATCCTGCCTCGCCGCGTTCGGTGTCC-TCCAGTTTGT--CCACGAGC 523809
Query 9059 -CCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTC 9117
||||| ||||| ||||| | || ||||| || || || || | || || |||
Sbjct 523810 TCCAGTTCCGGATAGAAGATGCGCTCGCAAATGAACTGGGCGATGCGATCGCCGCGCTTC 523869
Query 9118 ACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCC 9177
|| | ||||| ||| || |||||||| ||||| || || | ||| || | |||||||
Sbjct 523870 ACCTCGAAGTCCACGTCCGAGTGATTGAAGAGCACGACGCCGAGGTTGCCGCGGTAATCC 523929
Query 9178 TCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGC 9237
|| || | ||| || || ||||| |||||||||| ||| || || ||||||||||| ||
Sbjct 523930 TCGTCCACCACGCCGGCGCCCACATCGATGAAGTTCTTCACGGCCAGTCCAGAGCGTGGA 523989
Query 9238 GCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCC 9297
|| | || |||||| | ||| |||| | |||||| ||| ||||||| | || | ||
Sbjct 523990 GCAACGCGGCCGTAGGAGCCCTCCGGAACCTGCACCTGCAGGTCGGTCTTCACAATGGCC 524049
Query 9298 TTGCCGTGTTTTGGAATCACGGTGTCGTAGCCGCTCTTGAGATCAAACCCAGCTGCCCTG 9357
||||| | |||| ||| ||||||| ||||| || || | || || ||| ||
Sbjct 524050 TTGCCCCGGGCGGGAACCACCAGGTCGTAGGCGCTCCGTAGGTCCACTCCCGCCGCCTTG 524109
Query 9358 TCCGATCCCTTCGTGGGCGCAAAAGCGTTTTCGGT 9392
| |||||| || ||||||| || ||||||||
Sbjct 524110 GCGGATCCCCTCACCGGCGCAAGGGCATTTTCGGT 524144
>seq5277
Length=7425378
Score = 129 bits (142), Expect = 4e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || ||| ||||| ||||| |||||||| || ||| | || | || ||
Sbjct 1192992 ACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCTTCA 1192933
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| |||||||| ||||||||||| ||||| | ||||| |||||||||||| |
Sbjct 1192932 AGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGA 1192873
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | | || || | ||| ||||||| ||||| || ||
Sbjct 1192872 ATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTCTTG 1192813
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || || ||||| ||||||||
Sbjct 1192812 CCAGTCAAGGTCTTCACAAAGATCTGCAT 1192784
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || || || ||||| || ||||| || ||||| |||| | || ||
Sbjct 1193676 ACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCCTCA 1193617
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| |||||||| |||| |||||| ||||| | ||||| |||||||||||| |
Sbjct 1193616 AGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGA 1193557
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | | || || | || ||||||| || || ||||||
Sbjct 1193556 ATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTT 1193497
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || || || || |||||
Sbjct 1193496 CCGGTTAAGGTCTTCACGAAGATTTGCAT 1193468
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || | ||| || | |||||| || || || || || || || |||||||| ||
Sbjct 1194378 CCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGAC 1194319
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | || |||| ||||||||||| |||||||| |||| ||||| || || | ||||
Sbjct 1194318 AGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1194259
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||||||||| || || || ||| | | | || || | |||||||
Sbjct 1194258 ATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACC 1194199
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| || || || || | || || || || || |||||
Sbjct 1194198 TCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| |||| || ||||||||||| || || ||| |||||| || || ||||| || ||
Sbjct 1194151 GCCACCCCGAAGACGCAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGA 1194092
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
| | || | || |||| |||||||| || || || || ||||| ||||| | |||
Sbjct 1194091 CAAGGTACGGCCATCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGG 1194032
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
|| |||||| ||||| ||||| || || | | | || || | ||| ||
Sbjct 1194031 AATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAAC 1193972
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || ||||| || |||| || || || || || |||||
Sbjct 1193971 CTCCAGAGTTATGGTTTTACCGGTCAGGGTCTTCACGAAGATTTGCAT 1193924
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || || ||| || || || ||||| || || ||| | ||| | || |||
Sbjct 1193904 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCC 1193845
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||||| ||||| || || ||||| ||||| | ||||| |||||||||||| |
Sbjct 1193844 AGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGA 1193785
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|| || |||||| | | | || || | ||| || || | || || || ||
Sbjct 1193784 ATTTTGGCCTTTACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGGGTGATGGTCTTG 1193725
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || || || ||||||||
Sbjct 1193724 CCAGTTAAGGTCTTCACGAAGATCTGCAT 1193696
>seq4488
Length=533506
Score = 113 bits (124), Expect = 3e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| ||| || || ||| || || || ||||| || || || | |||
Sbjct 135522 AGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGA 135463
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| |||||||
Sbjct 135462 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 135403
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| || ||| | | | || || | ||||||||||| ||
Sbjct 135402 TTGTCCTGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTG 135343
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|| || || || || | ||||| ||||| |||||||| |||
Sbjct 135342 ATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCATGGTG 135301
>seq4172
Length=1033301
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| |||||||| | ||| ||| ||||| || ||||| || || ||| | ||
Sbjct 906977 AGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGT 907036
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| ||||| || |||| ||||| ||||| | ||| | ||||||
Sbjct 907037 CCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 907096
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | || || | ||| ||||||| ||
Sbjct 907097 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTG 907156
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || |||||||| || || || ||||||||
Sbjct 907157 ATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||||| || || || || || || || || ||||| || | | | ||
Sbjct 907433 AGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGACAAAGTACGT 907492
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| |||||| ||||| || |||| ||||| ||||| | ||||| ||||||
Sbjct 907493 CCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCC 907552
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || | ||| ||||||| ||
Sbjct 907553 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTG 907612
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || |||||||| || || ||||| |||||
Sbjct 907613 ATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCAT 907650
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||||||| | ||| ||| || || || || ||||| || | | ||
Sbjct 907205 AGACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTACGT 907264
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| ||||| || |||| ||||| ||||| | ||||| ||||||
Sbjct 907265 CCATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCC 907324
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || | ||| ||||||| ||
Sbjct 907325 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTG 907384
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || |||| ||| || || || ||||||||
Sbjct 907385 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 907422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380912394906567
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