Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq5079 87.8 3e-12 seq4704 87.8 3e-12 seq4161 87.8 3e-12 seq30 84.2 4e-11 >seq5079 Length=1084440 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 806934 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 806993 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 806994 CCTGCCCCCGCAACCA 807009 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 1002477 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 1002536 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 1002537 CCTGCCCCCGCAACCA 1002552 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||| Sbjct 270 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 329 Query 133023 CCCTCCCCCGCATCCA 133038 || ||||||| ||| Sbjct 330 CCTATCCCCGCAACCA 345 >seq4704 Length=42152 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 40101 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 40042 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 40041 CCTGCCCCCGCAACCA 40026 >seq4161 Length=32127 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 31864 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 31805 Query 133023 CCCTCCCCCGCATCCA 133038 || |||||||| ||| Sbjct 31804 CCTGCCCCCGCAACCA 31789 >seq30 Length=443100 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||| Sbjct 154591 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 154650 Query 133023 CCCTCCCCCGCATCCACAA 133041 || ||||||| ||| || Sbjct 154651 CCTATCCCCGCAACCAAAA 154669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895705611052680