Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5242 329 6e-85 seq5214 315 1e-80 >seq5242 Length=5320397 Score = 329 bits (364), Expect = 6e-85 Identities = 575/826 (70%), Gaps = 17/826 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | ||||| ||||| || ||||| || |||| |||||| |||| Sbjct 3387691 CTGGTACTCGCCCACCTTCTTCTCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTC 3387750 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||| ||||| ||||| || | | || || ||||| || |||||| Sbjct 3387751 CATGAAGTTGAACGGGTTCTTGGTGTTGTAGATCT-TGCCAACGCCCAACTCCACCAGCA 3387809 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | ||||||| || |||| ||||| | ||||| ||| ||||||||| |||||| Sbjct 3387810 AGCGATCCGCCACAAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCCGATGAGGT 3387869 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| |||| || | |||||| ||||||| ||| || |||| || || | | |||| Sbjct 3387870 TCACAGGCAGGGCGTCTGTGAGGAACTCCTGCTCAATGAGCACCGCATCGCGGATGATCT 3387929 Query 48078 GCTTAACGCGG--GACTCTGAGGGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCA-G 48133 | | ||| | |||| | | | ||| | ||||||| | | | || ||| | Sbjct 3387930 CGATGATGCGCTCGCGTCTGGG---TCGCTGCACCAGGTGCTGGA---ACATCA-GCACG 3387982 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || ||||| | |||||| || ||||| ||| ||| ||| ||||||||||| || || Sbjct 3387983 GCGAAGTCACAGTGCAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCC 3388042 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || || ||||||||||| | ||||| ||| |||||||||| Sbjct 3388043 GGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATG 3388102 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 |||||||| || || || ||| ||| | ||| |||||| || |||| |||||| Sbjct 3388103 CCCTCCACGGCGGCAAATGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGAGGAGATC 3388162 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 ||||| || |||||||| ||||| ||| | ||||||||||| ||||| ||| Sbjct 3388163 CAGGACAGAGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTCTCGATGGCGTTGAAC 3388222 Query 48374 AGCTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 || | || | | | |||| ||| | || || || |||| |||||||| Sbjct 3388223 AGGTACT--CCCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACGCTGTACATCT 3388280 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | |||||||| ||||| || ||||||||||| ||||||||| | |||||| | || Sbjct 3388281 CCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCCGTGATCT 3388340 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 |||| || | ||| | ||||| ||| ||||||||||| || ||||| || || |||| Sbjct 3388341 GCACCTCCTGGCTGAACCGCTCCACCAGGTTCTCATTGACGATGCCATCGGAGGCGGCAA 3388400 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 ||||||| || || || | ||| || ||||||| || |||| | |||| | Sbjct 3388401 AGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCGTCGTCCTTGAGGCGGTGCCAGTCGG 3388460 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||| ||| ||| ||||| || || || |||||||| || || Sbjct 3388461 TCAGGTCCTTGGACAGATCCACCTCCTCTACGGTCCAGAAAGAGGC 3388506 >seq5214 Length=3698012 Score = 315 bits (348), Expect = 1e-80 Identities = 995/1519 (66%), Gaps = 50/1519 (3%) Strand=Plus/Plus Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 ||| ||||||| | |||||| ||||| || || || | || ||||| ||| | ||| Sbjct 3420543 TGATGGTTGACCACCTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTG 3420602 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 |||||||||| |||||||| |||| || || |||||| || ||||||||||| Sbjct 3420603 TAGGGCTCGAAAGATTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGT 3420662 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGA-AGCT-CTGCCC 213081 || ||||| || |||||| || ||||||| |||| | | || || | ||||| Sbjct 3420663 GCAACCAGCAGGGAGTTCCTGACACCGTGCTGCTTGATG-GACTCCTTCAGTTTCTGCCA 3420721 Query 213082 AGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGC 213141 | ||||| ||||||| | |||| || ||||||||| |||||| || | Sbjct 3420722 A-TCCCA---------CAGGTCCGTGGGCTTCTTGTCCCACATGTCGTACTGCAGAATTC 3420771 Query 213142 CTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGC 213201 | ||||||||||||||||||| ||| | ||||| || | ||| |||||||| | Sbjct 3420772 CCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCAC 3420831 Query 213202 AGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTT-----GAGCTT 213256 || || | || ||| ||||||| |||||||| ||||||| | || || | Sbjct 3420832 AGCTGGCTTCCAAGGCGCCGTAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGG 3420891 Query 213257 CTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTG 213316 ||| |||| | ||| | ||| ||| |||| | | | ||||| | ||||| Sbjct 3420892 CTT--CCTC-GCTTTCGT-ATGGGAATCG-CATGAGAATCAGGGCGTCAGCGAAACCCTG 3420946 Query 213317 GACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTA 213376 ||| |||||||| | || | || |||| ||||| || ||| || ||| || Sbjct 3420947 GACACCGATGCCCACCGGACGATGCCTCAAATTAGATTTCTTTGTCTCTGGCAGGGGATA 3421006 Query 213377 AAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAG 213436 ||||||| ||| || ||||||||||| || | ||| || |||||||| | ||| Sbjct 3421007 AAAGTTGATGTCAATTATCTTGTTGAGATTTCTGGTAACCGTCTTGGTGACTTCCTTCAG 3421066 Query 213437 GTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGC 213496 | | | || | |||| | | | | || || ||| ||||| ||| || Sbjct 3421067 TTTTTTGAAATC--ATACGTCTTCTCGGGCGTG-ACGAACATGTTGAGGGCAATGGATGC 3421123 Query 213497 CAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTT 213556 ||||||||| || || | ||| | | | | ||||| | ||| |||||||||| || Sbjct 3421124 CAGGTTGCACACTGCAATCTCGTCCGGCGCGGAATACTCAACGATTTCGGTGCACAAATT 3421183 Query 213557 GCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTA 213616 |||||| ||||||||| | ||||| ||||| ||| |||| ||||||||| | Sbjct 3421184 GCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCTGTTGCACGAATCCTTGAA 3421243 Query 213617 GAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCT 213676 |||||||| || ||||| || | ||| ||| | | || | ||| | | || Sbjct 3421244 CAGCATGTACGGATTGCCGGTTTCCACCTGCGACTCAATGATGGCGAACCACAAGGACTG 3421303 Query 213677 GGCCTTGACCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTACTGTTCGTAGAGCTCGT 213735 ||||||||| ||| | || ||| | | |||||| || ||| |||| | Sbjct 3421304 TGCCTTGACCGTCCGGTTCGCA----CGGCCCTCCTGCTCGTATTGCGTGTACAGCTTTT 3421359 Query 213736 TGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACA-GGATGCGGGACACATGAGGCTC 213794 ||| || | |||||| || || ||| || || || ||| |||||||| || | Sbjct 3421360 CGAACTCATCGCCCCACACATCGTGCAGGCCGGGGCATTTGTGC-GGACACATCAGCGAC 3421418 Query 213795 CAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAAC 213854 |||||||||| | ||| | | |||||| || || || | ||| || ||| ||| Sbjct 3421419 CAGTCCCCGTTGGCCTCGACGCGTTTCATGAAAAGATCGGGTATCCAGAGGGCGTAGAAG 3421478 Query 213855 AGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAG 213914 || || | || | |||| ||| || | ||| || || || || || || || Sbjct 3421479 AGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTTCTTCTTGAGTTCCAGGAACTCGAAC 3421538 Query 213915 ATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCCG---CCC 213971 | ||||| |||||| ||||||| ||| ||||| ||||| || |||| ||||||| ||| Sbjct 3421539 ACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCGAAGGCACCGGGCCGCTTGCCGCCACCC 3421598 Query 213972 TGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGAC 214031 || ||||| | ||||| ||||||||| | || | ||||||||| || ||||| Sbjct 3421599 TGATCCACGTAACGTGCCACATTGTTGAAGACCCTGAGCATGGGTACCAGGCCATTGGAG 3421658 Query 214032 TGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GAG 214087 || || || || || | | ||| ||||| || ||| ||||| || Sbjct 3421659 GTGCCATTCGTGCCGCAGATGGAGGTGCCCTTGGCCC---GGATGC-AATGGACATTCAG 3421714 Query 214088 CCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCC 214147 || ||||| || || | || |||||||||||||| | ||| | || | |||||| Sbjct 3421715 TCCAATGCCTCCTGCCGATTTCGAGATCATGGCGCACTGTTCCACCGACTTGAAGATGCC 3421774 Query 214148 GGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGA 214207 | || ||| | || | | |||||| |||||| ||| || || |||| | Sbjct 3421775 CTCGATCGAGTCGGCCGTCATGGTCAGCAGGAAGCACGACGACAGTTGCGGCCGATTTGT 3421834 Query 214208 GCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTA 214267 | | | | |||||||| || ||| ||| | | ||| | || || || |||| Sbjct 3421835 GGCTGCGGCAAAAAGCGTTGGCGAGGCGTGGGTGAAGAACCGCTCCGACAGCAGGTTGTA 3421894 Query 214268 GGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCA 214326 |||||||| | | | |||||| | ||||| | || ||| | |||||||| Sbjct 3421895 GGTCTCCACGGCCGCATCGATGTCCTCTCCATGGATTCCGATCGC-CACGCGCATCAGCA 3421953 Query 214327 TGTGCTGGGGCCTCTCTATGGGTCCTTT--GGGGCCCTTGAGCAGGTAGGAGCGCTCCAG 214384 ||||||| || | ||| | | |||| | | ||| |||||||| || || || || Sbjct 3421954 TGTGCTGCGGACGCTC--GGCGATCTTTCCGTTTCTCTTCAGCAGGTACGAACGTTCGAG 3422011 Query 214385 AGTCTTGAACCCAAAGTAG 214403 || || || ||||||||| Sbjct 3422012 GGTTTTAAAACCAAAGTAG 3422030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931469583855360