Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5214 197 3e-45 seq5242 179 7e-40 >seq5214 Length=3698012 Score = 197 bits (218), Expect = 3e-45 Identities = 620/950 (65%), Gaps = 19/950 (2%) Strand=Plus/Plus Query 221698 GTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTAT 221757 ||| ||||||| | |||||||| ||||| || | ||||||| || ||||| | Sbjct 3421106 GTTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCGGCGCGGAATACTCAAC 3421165 Query 221758 GATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCG 221817 ||| || || || | ||||||||||||||||| || | | | || || ||| | Sbjct 3421166 GATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCT 3421225 Query 221818 ATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAAT 221877 ||| | |||||| | ||||| | ||| ||| || |||| ||| | | | | || Sbjct 3421226 GTTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTCCACCTGCGACTCAATGAT 3421285 Query 221878 CTTGTCCCAGA-GTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCAT 221936 | ||| | | || || | | ||||||| || | ||||| || || | Sbjct 3421286 GGCGAACCACAAGGACTGTGCCT-TGACCGTCCGGTTCGCACGGCCCTC---CTGCTCGT 3421341 Query 221937 ACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGG 221996 | || || ||| | || |||| || || || | |||| |||||| || || || Sbjct 3421342 ATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTGCAGGCCGGGGCATTTGT 3421401 Query 221997 CGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGA 222056 ||||||||||| ||||| | |||| | | ||| | | |||||| || || || | Sbjct 3421402 GCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTTCATGAAAAGATCGGGTA 3421461 Query 222057 TCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCA 222116 |||| || || | |||||||| | || || | ||||||| |||| |||| ||| | | Sbjct 3421462 TCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTTCTTCTTGA 3421521 Query 222117 GATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGG 222176 | |||| ||||| || | ||| | |||||| |||||||| || | ||| | || |||| Sbjct 3421522 GTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCGAAGGCACCGG 3421581 Query 222177 GTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCG 222236 | |||||| ||||||||||||||| | ||| | |||||||| | || | | Sbjct 3421582 GCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTTGAAGACCCTGAGCATGG 3421641 Query 222237 GTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT 222296 ||||||| || ||||| || || ||||| ||| | | || ||||| | | Sbjct 3421642 GTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGATGGAGGTGCCCTTGGCCCGGATGC 3421701 Query 222297 TACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTT-GAGA 222355 | | || || || || || || || |||||||||||||||||| || || | Sbjct 3421702 AATGGACATTCAGTCCAATGCCTCCTGCCGATTTCGAGATCATGGCGCA-CTGTTCCACC 3421760 Query 222356 GTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATC 222415 | | | ||||||||| || ||||| || | | | ||||||| || || ||||||| Sbjct 3421761 GACTTGAAGATGCCCTCGATCGAGTCGGCCGTCATGGTCAGCAGGAAGCACGACGACAGT 3421820 Query 222416 TG----AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCC 222471 || ||||| |||| ||| ||| ||||| || |||||| || ||| | | Sbjct 3421821 TGCGGCCGATTT-GTGG---CTGCGGCAAAAAGCGTTGGCGAGGCGTGGGTGAAGAACCG 3421876 Query 222472 CCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCAT 222531 | |||| ||| | ||| ||||| ||| | |||||| || || || || || Sbjct 3421877 CTCCGACAGCAGGTTGTAGGTCTCCACGGCCGCATCGATGTCCTCTCCATGGATTCCGAT 3421936 Query 222532 GGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTT--GGAGCTGGAGAGC 222589 || | ||| ||||| ||| || | ||| | || | || | || ||| Sbjct 3421937 CGCCACGCGCATCAGCATGTGCTGCGGACGCTCGGC--GATCTTTCCGTTTCTCTTCAGC 3421994 Query 222590 AGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 |||||||| ||| || || || || |||||||||||| ||||||| Sbjct 3421995 AGGTACGAACGTTCGAGGGTTTTAAAACCAAAGTAGTTGTACCCAAAGTC 3422044 >seq5242 Length=5320397 Score = 179 bits (198), Expect = 7e-40 Identities = 528/816 (65%), Gaps = 15/816 (2%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||||| || ||| | |||||| |||||||| || || |||| || || | Sbjct 3388498 CTGGACCGTAGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGGCACCGCCTCAAGGA 3388439 Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631 ||||||| || || || | ||||| |||| |||||||| ||||| ||||| || || Sbjct 3388438 CGACGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCCTCCGATGGCATCGT 3388379 Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691 || ||||| ||| ||| | |||| | ||| |||||| | ||||||| || || Sbjct 3388378 CAATGAGAACCTGGTGGAGCGGTTCAGCCAGGAGGTGCAGATCACGGAGGCCCGCTGCTT 3388319 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 |||||| |||||||| ||||| || || |||||||| ||| |||| || | ||||| Sbjct 3388318 CTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTA---CAGCGTGCTGAT 3388262 Query 25752 GACGTACA-TTACAGACGT----CGC-CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCA 25805 || ||| ||||| || ||| | || | || ||||| ||||||||| Sbjct 3388261 --CG-ACACTTACATCCGGGATCCGCACCAGCGGGAGTACCTGTTCAACGCCATCGAGAC 3388205 Query 25806 CATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGC 25865 || || | ||| | ||||| ||||| || |||||| | | || || Sbjct 3388204 GATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCTCTGTCCTGGATCTCCTCCAAGTCGGC 3388145 Query 25866 TACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925 | || || ||||| | | || ||||| || |||||||||||||| |||||||| Sbjct 3388144 CAATTTCGGGGAGCGCATCATCGCATTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAG 3388085 Query 25926 GTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAA 25985 || || |||| |||||||| ||| || || ||||| || ||| ||| ||||| Sbjct 3388084 CTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCCAA 3388025 Query 25986 CGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGG 26045 |||||| ||| | | |||||||| | ||| | || || ||| ||| | | | | Sbjct 3388024 CGAGCTGATCTCCCGCGACGAGGGATTGCACTGTGACTTCGCCGTGCTGATGTTCCAG-- 3387967 Query 26046 CCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGA 26105 ||| || | || ||| | ||| | || | |||||| || || ||| Sbjct 3387966 -CACCTGGTGCAGCGACCCAGACGCGAGCGCATCATCGAGATCATCCGCGATGCGGTGCT 3387908 Query 26106 GATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAG 26165 || ||| ||||||| | | ||||||||| Sbjct 3387907 CATTGAGCAGGAGTTCCTCACAGACGCCCTGCCTGTGAACCTCATCGGCATGAACTGTGA 3387848 Query 26166 ACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGC 26225 || ||| ||| |||||||||| |||||| || | ||||| || |||| | | Sbjct 3387847 CCTGATGTCCCAGTACATTGAGTTTGTGGCGGATCGCTTGCTGGTGGAGTTGGGCGTTGG 3387788 Query 26226 CAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285 || |||||| || ||||||||| |||| ||||| | || ||| |||| || || Sbjct 3387787 CAAGATCTACAACACCAAGAACCCGTTCAACTTCATGGAGATGATCTCGCTGGACGGCAA 3387728 Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||| ||||| || |||| ||| ||||| || || Sbjct 3387727 GACCAATTTCTTCGAGAAGAAGGTGGGCGAGTACCA 3387692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928781766269760