Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq5214 197 3e-45
seq5242 179 7e-40
>seq5214
Length=3698012
Score = 197 bits (218), Expect = 3e-45
Identities = 620/950 (65%), Gaps = 19/950 (2%)
Strand=Plus/Plus
Query 221698 GTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTAT 221757
||| ||||||| | |||||||| ||||| || | ||||||| || ||||| |
Sbjct 3421106 GTTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCGGCGCGGAATACTCAAC 3421165
Query 221758 GATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCG 221817
||| || || || | ||||||||||||||||| || | | | || || ||| |
Sbjct 3421166 GATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCT 3421225
Query 221818 ATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAAT 221877
||| | |||||| | ||||| | ||| ||| || |||| ||| | | | | ||
Sbjct 3421226 GTTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTCCACCTGCGACTCAATGAT 3421285
Query 221878 CTTGTCCCAGA-GTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCAT 221936
| ||| | | || || | | ||||||| || | ||||| || || |
Sbjct 3421286 GGCGAACCACAAGGACTGTGCCT-TGACCGTCCGGTTCGCACGGCCCTC---CTGCTCGT 3421341
Query 221937 ACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGG 221996
| || || ||| | || |||| || || || | |||| |||||| || || ||
Sbjct 3421342 ATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTGCAGGCCGGGGCATTTGT 3421401
Query 221997 CGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGA 222056
||||||||||| ||||| | |||| | | ||| | | |||||| || || || |
Sbjct 3421402 GCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTTCATGAAAAGATCGGGTA 3421461
Query 222057 TCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCA 222116
|||| || || | |||||||| | || || | ||||||| |||| |||| ||| | |
Sbjct 3421462 TCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTTCTTCTTGA 3421521
Query 222117 GATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGG 222176
| |||| ||||| || | ||| | |||||| |||||||| || | ||| | || ||||
Sbjct 3421522 GTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCGAAGGCACCGG 3421581
Query 222177 GTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCG 222236
| |||||| ||||||||||||||| | ||| | |||||||| | || | |
Sbjct 3421582 GCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTTGAAGACCCTGAGCATGG 3421641
Query 222237 GTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT 222296
||||||| || ||||| || || ||||| ||| | | || ||||| | |
Sbjct 3421642 GTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGATGGAGGTGCCCTTGGCCCGGATGC 3421701
Query 222297 TACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTT-GAGA 222355
| | || || || || || || || |||||||||||||||||| || || |
Sbjct 3421702 AATGGACATTCAGTCCAATGCCTCCTGCCGATTTCGAGATCATGGCGCA-CTGTTCCACC 3421760
Query 222356 GTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATC 222415
| | | ||||||||| || ||||| || | | | ||||||| || || |||||||
Sbjct 3421761 GACTTGAAGATGCCCTCGATCGAGTCGGCCGTCATGGTCAGCAGGAAGCACGACGACAGT 3421820
Query 222416 TG----AGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCC 222471
|| ||||| |||| ||| ||| ||||| || |||||| || ||| | |
Sbjct 3421821 TGCGGCCGATTT-GTGG---CTGCGGCAAAAAGCGTTGGCGAGGCGTGGGTGAAGAACCG 3421876
Query 222472 CCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCAT 222531
| |||| ||| | ||| ||||| ||| | |||||| || || || || ||
Sbjct 3421877 CTCCGACAGCAGGTTGTAGGTCTCCACGGCCGCATCGATGTCCTCTCCATGGATTCCGAT 3421936
Query 222532 GGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTT--GGAGCTGGAGAGC 222589
|| | ||| ||||| ||| || | ||| | || | || | || |||
Sbjct 3421937 CGCCACGCGCATCAGCATGTGCTGCGGACGCTCGGC--GATCTTTCCGTTTCTCTTCAGC 3421994
Query 222590 AGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639
|||||||| ||| || || || || |||||||||||| |||||||
Sbjct 3421995 AGGTACGAACGTTCGAGGGTTTTAAAACCAAAGTAGTTGTACCCAAAGTC 3422044
>seq5242
Length=5320397
Score = 179 bits (198), Expect = 7e-40
Identities = 528/816 (65%), Gaps = 15/816 (2%)
Strand=Plus/Minus
Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571
|||||||| || ||| | |||||| |||||||| || || |||| || || |
Sbjct 3388498 CTGGACCGTAGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGGCACCGCCTCAAGGA 3388439
Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631
||||||| || || || | ||||| |||| |||||||| ||||| ||||| || ||
Sbjct 3388438 CGACGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCCTCCGATGGCATCGT 3388379
Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691
|| ||||| ||| ||| | |||| | ||| |||||| | ||||||| || ||
Sbjct 3388378 CAATGAGAACCTGGTGGAGCGGTTCAGCCAGGAGGTGCAGATCACGGAGGCCCGCTGCTT 3388319
Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751
|||||| |||||||| ||||| || || |||||||| ||| |||| || | |||||
Sbjct 3388318 CTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTA---CAGCGTGCTGAT 3388262
Query 25752 GACGTACA-TTACAGACGT----CGC-CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCA 25805
|| ||| ||||| || ||| | || | || ||||| |||||||||
Sbjct 3388261 --CG-ACACTTACATCCGGGATCCGCACCAGCGGGAGTACCTGTTCAACGCCATCGAGAC 3388205
Query 25806 CATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGC 25865
|| || | ||| | ||||| ||||| || |||||| | | || ||
Sbjct 3388204 GATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCTCTGTCCTGGATCTCCTCCAAGTCGGC 3388145
Query 25866 TACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925
| || || ||||| | | || ||||| || |||||||||||||| ||||||||
Sbjct 3388144 CAATTTCGGGGAGCGCATCATCGCATTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAG 3388085
Query 25926 GTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAA 25985
|| || |||| |||||||| ||| || || ||||| || ||| ||| |||||
Sbjct 3388084 CTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCCAA 3388025
Query 25986 CGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGG 26045
|||||| ||| | | |||||||| | ||| | || || ||| ||| | | | |
Sbjct 3388024 CGAGCTGATCTCCCGCGACGAGGGATTGCACTGTGACTTCGCCGTGCTGATGTTCCAG-- 3387967
Query 26046 CCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGA 26105
||| || | || ||| | ||| | || | |||||| || || |||
Sbjct 3387966 -CACCTGGTGCAGCGACCCAGACGCGAGCGCATCATCGAGATCATCCGCGATGCGGTGCT 3387908
Query 26106 GATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAG 26165
|| ||| ||||||| | | |||||||||
Sbjct 3387907 CATTGAGCAGGAGTTCCTCACAGACGCCCTGCCTGTGAACCTCATCGGCATGAACTGTGA 3387848
Query 26166 ACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGC 26225
|| ||| ||| |||||||||| |||||| || | ||||| || |||| | |
Sbjct 3387847 CCTGATGTCCCAGTACATTGAGTTTGTGGCGGATCGCTTGCTGGTGGAGTTGGGCGTTGG 3387788
Query 26226 CAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285
|| |||||| || ||||||||| |||| ||||| | || ||| |||| || ||
Sbjct 3387787 CAAGATCTACAACACCAAGAACCCGTTCAACTTCATGGAGATGATCTCGCTGGACGGCAA 3387728
Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||||| ||||| || |||| ||| ||||| || ||
Sbjct 3387727 GACCAATTTCTTCGAGAAGAAGGTGGGCGAGTACCA 3387692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928781766269760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |