Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_019516.1
Length=161440
Score E
Sequences producing significant alignments: (Bits) Value
seq5080 93.3 4e-14
seq5079 89.7 5e-13
seq4241 87.8 2e-12
seq30 86.0 6e-12
>seq5080
Length=249237
Score = 93.3 bits (102), Expect = 4e-14
Identities = 57/61 (93%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 28885 ATTAGCTCAGCGGTAGAGCATCTCGTTTACACCGAGGCGGTCGGCGGTTCAATCCCGTCA 28944
||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||
Sbjct 211014 ATTAGCTCAGCGGTAGAGCGTCTCGTTTACACCGAGATGGTCGGCGGTTCGATCCCGTCA 211073
Query 28945 T 28945
|
Sbjct 211074 T 211074
Score = 89.7 bits (98), Expect = 5e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 17055 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAGTCCAGC 17113
|||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct 80006 TAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGGTTCGAATCCAGC 80064
>seq5079
Length=1084440
Score = 89.7 bits (98), Expect = 5e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 17055 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAGTCCAGC 17113
|||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct 782338 TAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGGTTCGAATCCAGC 782280
>seq4241
Length=507456
Score = 87.8 bits (96), Expect = 2e-12
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 28884 GATTAGCTCAGCGGTAGAGCATCTCGTTTACACCGAGGCGGTCGGCGGTTCAATCCCGTC 28943
|||||||||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||
Sbjct 464636 GATTAGCTCAGCGGTAGAGCGTCTCGTTTACACCGAGATGGTCGGGGGTTCGATCCCCTC 464695
Query 28944 ATC 28946
|||
Sbjct 464696 ATC 464698
Score = 82.4 bits (90), Expect = 8e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 32003 GCCGAGCACGGTTGGTTACATTGCGGACCAGCTGGAGCAGGTCATTTTGTAAAGATGGTT 32062
|| ||||| |||| | |||| || || || ||| |||| |||||||| || ||||||
Sbjct 32393 GCTGAGCAGGGTTATCTGTATTGTGGCCCGGCGGGATCAGGCCATTTTGTCAAAATGGTT 32334
Query 32063 CATAATGGAATCGAATACGGAATTATGCAAGCATACGCCGAAGGATTTAACATCTTGCAC 32122
||||| || || |||||||| || ||||| || | || ||||| ||| || || || ||
Sbjct 32333 CATAACGGCATTGAATACGGCATGATGCAGGCCTTTGCGGAAGGGTTTGACGTCATGTAC 32274
>seq30
Length=443100
Score = 86.0 bits (94), Expect = 6e-12
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 32024 TGCGGACCAGCTGGAGCAGGTCATTTTGTAAAGATGGTTCATAATGGAATCGAATACGGA 32083
||||| || || ||| |||| |||||||| || ||||||||||| || || ||||||||
Sbjct 236116 TGCGGCCCTGCCGGATCAGGCCATTTTGTTAAAATGGTTCATAACGGTATTGAATACGGC 236057
Query 32084 ATTATGCAAGCATACGCCGAAGGATTTAAC 32113
|| |||||||| | |||||||| ||| ||
Sbjct 236056 ATGATGCAAGCCTTTGCCGAAGGCTTTGAC 236027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 516444950376000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |