Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq5080 93.3 4e-14 seq5079 89.7 5e-13 seq4241 87.8 2e-12 seq30 86.0 6e-12 >seq5080 Length=249237 Score = 93.3 bits (102), Expect = 4e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 28885 ATTAGCTCAGCGGTAGAGCATCTCGTTTACACCGAGGCGGTCGGCGGTTCAATCCCGTCA 28944 ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| Sbjct 211014 ATTAGCTCAGCGGTAGAGCGTCTCGTTTACACCGAGATGGTCGGCGGTTCGATCCCGTCA 211073 Query 28945 T 28945 | Sbjct 211074 T 211074 Score = 89.7 bits (98), Expect = 5e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 17055 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAGTCCAGC 17113 |||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 80006 TAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGGTTCGAATCCAGC 80064 >seq5079 Length=1084440 Score = 89.7 bits (98), Expect = 5e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 17055 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAGTCCAGC 17113 |||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 782338 TAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGGTTCGAATCCAGC 782280 >seq4241 Length=507456 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 28884 GATTAGCTCAGCGGTAGAGCATCTCGTTTACACCGAGGCGGTCGGCGGTTCAATCCCGTC 28943 |||||||||||||||||||| |||||||||||||||| |||||| ||||| ||||| || Sbjct 464636 GATTAGCTCAGCGGTAGAGCGTCTCGTTTACACCGAGATGGTCGGGGGTTCGATCCCCTC 464695 Query 28944 ATC 28946 ||| Sbjct 464696 ATC 464698 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 32003 GCCGAGCACGGTTGGTTACATTGCGGACCAGCTGGAGCAGGTCATTTTGTAAAGATGGTT 32062 || ||||| |||| | |||| || || || ||| |||| |||||||| || |||||| Sbjct 32393 GCTGAGCAGGGTTATCTGTATTGTGGCCCGGCGGGATCAGGCCATTTTGTCAAAATGGTT 32334 Query 32063 CATAATGGAATCGAATACGGAATTATGCAAGCATACGCCGAAGGATTTAACATCTTGCAC 32122 ||||| || || |||||||| || ||||| || | || ||||| ||| || || || || Sbjct 32333 CATAACGGCATTGAATACGGCATGATGCAGGCCTTTGCGGAAGGGTTTGACGTCATGTAC 32274 >seq30 Length=443100 Score = 86.0 bits (94), Expect = 6e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 32024 TGCGGACCAGCTGGAGCAGGTCATTTTGTAAAGATGGTTCATAATGGAATCGAATACGGA 32083 ||||| || || ||| |||| |||||||| || ||||||||||| || || |||||||| Sbjct 236116 TGCGGCCCTGCCGGATCAGGCCATTTTGTTAAAATGGTTCATAACGGTATTGAATACGGC 236057 Query 32084 ATTATGCAAGCATACGCCGAAGGATTTAAC 32113 || |||||||| | |||||||| ||| || Sbjct 236056 ATGATGCAAGCCTTTGCCGAAGGCTTTGAC 236027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516444950376000