Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq601 131 1e-24 seq5214 114 8e-20 seq5277 102 5e-16 seq5036 89.7 3e-12 >seq601 Length=1931879 Score = 131 bits (144), Expect = 1e-24 Identities = 363/548 (66%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| || || | || | || |||| || || | Sbjct 903494 TTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGCGTGTTCCAGCATGGCAAGGTCG 903435 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || ||||| ||||| |||||| | || || ||||| |||||| | || || || | Sbjct 903434 AGATCATCGCCAACGACCAGGGTAATCGTACCACTCCATCCTATGTTGCCTTCACCGATA 903375 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || || || || || || | || | || || || | || | Sbjct 903374 CGGAGCGTCTGATCGGCGACGCCGCCAAGAACCAGGTGGCGATGAACCCGACCCAGACGA 903315 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || || || || | ||||||| || || || || || || ||||||| ||||| | Sbjct 903314 TCTTCGACGCCAAGCGCCTGATTGGCCGCAAGTTCGAGGACTCCGCTGTCCAGTCTGACA 903255 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || ||||| | | | || || || || | || || | | | Sbjct 903254 TGAAGCACTGGCCCTTCGAGGTGGTCAGCGCTGACGGCAAGCCCAAGATCGAGGTGACCT 903195 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| | |||| Sbjct 903194 ACAAGGACGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCGATGGTGCTCACCAA 903137 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | |||| |||| | |||| ||| ||||| || || | || || || || Sbjct 903136 GATGAAGGAGACCGCCGAG-GCCTATC-TGGGCAAGACTGTGACCAACGCTGTCATCACC 903079 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || || || || || ||||| || || || || || || | ||||| Sbjct 903078 GTGCCGGCCTACTTCAACGACTCGCAGCGTCAGGCGACCAAGGACGCCGGTACCATTGCC 903019 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| ||||| | || || || || || || || || || || | ||||| ||||| Sbjct 903018 GGTCTGAATGTGCTGCGCATCATCAACGAGCCCACGGCCGCTGCCATCGCTTACGGTCTG 902959 Query 474869 GATAAGAA 474876 || ||||| Sbjct 902958 GACAAGAA 902951 >seq5214 Length=3698012 Score = 114 bits (126), Expect = 8e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || || | | |||||| || ||||| ||||| || || ||||| || Sbjct 3523146 TTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC 3523087 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||||||||| ||||| |||||||| ||| ||| ||| |||||||| Sbjct 3523086 TGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCGATAGTATCC 3523027 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || || || ||||| ||||||||||| || || Sbjct 3523026 GACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 3522971 >seq5277 Length=7425378 Score = 102 bits (112), Expect = 5e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | ||||| ||| || || | || || || | ||||| Sbjct 1193917 ACGAAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 1193858 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || |||||||| ||||||||||| ||||| || ||||| || ||||| || Sbjct 1193857 GCGACCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGAATGCC 1193798 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| ||||| || || ||| ||||| ||||||| | | | |||||| Sbjct 1193797 CTCCTTGTCCTGAATTTTGGCCTTTACATTCTCAATGGTATCAGAGGGCTCAACTTCAAG 1193738 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || || | ||||| ||||| || || Sbjct 1193737 GGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATCTG 1193699 Score = 100 bits (110), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| || | ||||| || ||| || | || || || | ||| ||| Sbjct 1193688 CGAAGACGGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTT 1193629 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||| ||||| ||||| || |||||||| | || || ||||| || ||||| || Sbjct 1193628 CGTCCATCCTCAAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCC 1193569 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| |||||||| || ||| ||||| ||||||| || | || || Sbjct 1193568 TCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGTTCAACCTCCAGA 1193509 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| ||||| | ||||| ||||| ||||| Sbjct 1193508 GTGATGGTTTTTCCGGTTAAGGTCTTCACGAAGATTTG 1193471 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | || ||||| || || || ||||| || ||||| ||||||||||| ||||| Sbjct 1193395 ATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTT 1193336 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| ||||| || || || ||||| ||||||| || | || || || || Sbjct 1193335 GTCCTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGAT 1193276 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||||||| || ||||| ||||| ||||| Sbjct 1193275 GGTTTTACCGGTAAGGGTCTTTACGAAGATTTG 1193243 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || |||||||| ||||| ||||| ||||| || ||||| || ||||| || || || Sbjct 1194079 ATCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCTTT 1194020 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| || || ||||| ||||||| | | | || || || || Sbjct 1194019 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAACCTCCAGAGTTAT 1193960 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||||||| || ||||| ||||| ||||| Sbjct 1193959 GGTTTTACCGGTCAGGGTCTTCACGAAGATTTG 1193927 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || |||||||| ||||||||||| ||||| || ||||| || || || |||||||| Sbjct 1193167 ATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTT 1193108 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| || || ||||| ||||||| || | || || || || Sbjct 1193107 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGAT 1193048 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| || || Sbjct 1193047 GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTG 1193015 >seq5036 Length=2913872 Score = 89.7 bits (98), Expect = 3e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 || || || || || ||||| || ||||| || || || || || || || || || || Sbjct 184371 GACGCCGTCATCACAGTTCCGGCCTATTTCAACGACTCCCAGCGCCAGGCCACCAAGGAC 184312 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 || || ||||||||||| ||||| | || || ||||| || || ||||| || ||| Sbjct 184311 GCCGGCGCCATTGCAGGTCTGAATGTGCTCCGCATCATTAACGAGCCCACAGCCGCTGCA 184252 Query 474854 CTTGCTTATGGTCTTGATAAGAAT 474877 || || |||||||| || |||||| Sbjct 184251 CTGGCATATGGTCTGGACAAGAAT 184228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267946323848492