Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq30 136 5e-27 seq4667 98.7 1e-15 >seq30 Length=443100 Score = 136 bits (150), Expect = 5e-27 Identities = 341/518 (66%), Gaps = 0/518 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||| || || | || || || || || ||||||||||| ||||| || ||||| Sbjct 142497 ACACCAATTGGCCCCATACCCGGGCCACCGCCACCATGTGGAATGCAGAAAGTTTTATGC 142438 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || | |||| ||||| |||| ||||| || ||| || || ||||| ||| Sbjct 142437 AGGTTAAAGTGACTAACATCCCCACCGTAGTCTGCCGGGCGTGCAAGCCCAACCTGAGCA 142378 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| | ||||||||| ||||| || || | | ||| || Sbjct 142377 TTCATGTTGGCGCCATCCACATATACCTGCCCACCGGCTGAGTGCACCAGATCACAGATT 142318 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 | | |||||| |||||| || |||||||| || ||||| || ||||| | | Sbjct 142317 TCACGCATGTTTTCTTCAAACACGCCATGAGTAGAAGGATAAGTGATCATCACTGCGGCC 142258 Query 138423 AGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCATCA 138482 || ||| | || | || ||||| | |||| | || |||||||| | Sbjct 142257 AGATCATTCGCATGCGCCTTTATTTTCTCACGCATGTCTTCCAGATCAATGTTGCCGCCT 142198 Query 138483 TCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTAGTT 138542 |||||||||| || | ||||| ||||| || ||||| ||| ||| || || || Sbjct 142197 GCATCACACTTTACCACCACAACCTTCATGCCCGCCATTTGGGCAGAAGCTGGGTTGGTA 142138 Query 138543 CCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATCCTTGATGA 138602 ||||| || || | || || | ||| || | | | | || || || |||||| Sbjct 142137 CCATGCGCAGAAGCCGGAATTAAACAAACTGTCCGATGCCCTTCCCCACGCCCCTGATGA 142078 Query 138603 TATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGTTGTAAT 138662 || || | || | | || |||||||| || ||||| | || | |||||||| || Sbjct 142077 TACGCACGAATAACAAGCAAACCTGCATATTCCCCCTGCGCGCCAGAATTAGGTTGGAAG 142018 Query 138663 GATATAGAATCAAAACCTGTGATATCACATAACCATTT 138700 || | || |||| |||| | ||| |||| | ||| || Sbjct 142017 GAAACAGCATCATAACCGCTAATAGCACACAGCCACTT 141980 Score = 105 bits (116), Expect = 8e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 139851 GCTAACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATT 139910 || ||| ||| || ||||| ||||| ||||||||||||| ||||| | ||| || || Sbjct 140808 GCCAACGCCATGGCTTCTGCCGCTGCTGTTGCTTCATCTAGCAGAGAAGAGTTGGCGATA 140749 Query 139911 GGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCC 139970 || ||||| |||||||| || | |||||| | || || | ||||||| | || Sbjct 140748 TCCAACCCTGTCAGTTCTGTAATCATGGTTTGGAAGTTCAACAGGGCTTCCAGACGCCCT 140689 Query 139971 TGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACG 140030 || || || | ||||| || ||||||| |||||||||| ||||| || |||| Sbjct 140688 TGGCTGATTTCTGGCTGATACGGCGTGTAAGCTGTGTACCAAGCCGGATTTTCCAGAATA 140629 Query 140031 TTTCGCTGTATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTATAAG 140083 || ||||| || || | ||| | || || || || ||||| || || || Sbjct 140628 TTCCGCTGGATAACAGCGGGCAGCACCGTACCGTAATACCCTTGCCCGATCAG 140576 >seq4667 Length=397774 Score = 98.7 bits (108), Expect = 1e-15 Identities = 255/389 (66%), Gaps = 0/389 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || || | ||| ||||| || || ||||| ||||||||||| || || || Sbjct 183626 ACGCCAATTGGCCCCATGCCCGGACCACCGCCACCATGCGGAATACAGAACGTTTTGTGC 183567 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || | ||| | ||||| |||| || |||| || || || || ||||| || Sbjct 183566 AGGTTGAAATGGCTGACATCGCCACCGTAATCACCGGGGCGGGCAAGGCCCACCTGCGCG 183507 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| | ||| ||||| || || | ||| || | | ||| || Sbjct 183506 TTCATGTTCGCGCCATCCACATACACCTGCCCTCCGGCCTGATGCACCAGATCACAGATT 183447 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 | | ||| || |||||| || ||||| || || ||||| || ||||| | || Sbjct 183446 TCACGCATGCTTTCTTCAAACACGCCATGGGTGGAGGGATAGGTGATCATCACTGCGGAC 183387 Query 138423 AGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCATCA 138482 || ||| | | | | |||||| | | |||| | || || |||||| | Sbjct 183386 AGATCAGCCGCGTGAGCGGTCACTTTCTCCCGCATGTCTTCCAGATCAATATTGCCACCG 183327 Query 138483 TCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTAGTT 138542 |||||||||| || | ||||| ||||| || ||||| || || || || || Sbjct 183326 GCATCACACTTCACCACCACAACCTTCATGCCCGCCATCTGGGCGGAGGCCGGGTTGGTG 183267 Query 138543 CCATGTGCTGACTCTGGTATCAGACATAC 138571 || || || || | || |||||||| || Sbjct 183266 CCGTGGGCGGAGGCCGGAATCAGACACAC 183238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578959107721080