Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq5214 179 4e-40
seq5078 113 5e-20
>seq5214
Length=3698012
Score = 179 bits (198), Expect = 4e-40
Identities = 810/1268 (64%), Gaps = 37/1268 (3%)
Strand=Plus/Minus
Query 75689 GATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGT 75748
|||||||| | |||| ||||| || || ||||||||||| || || |||| ||
Sbjct 3421483 GATCTCTTCTACGCCCTCTGGATACCCGATCTTTTCATGAAACGCGTCGAGGCCAACGGG 3421424
Query 75749 CAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAG 75808
| ||||| || | ||||| |||| || || || ||| | | ||| || |||
Sbjct 3421423 GACTGGTCGCTGATGTGTCCGCACAAATGCCCCGGCCTGCACGATGTGTGGGGCGATGAG 3421364
Query 75809 TTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCC 75868
|| ||| || ||||| | || || ||||||| | || || ||| || | || |
Sbjct 3421363 TTCGAAAAGCTGTACACGCAATACGAGCAGGAGGGCCGTGCGAACCGGACGGT-CAAGGC 3421305
Query 75869 GCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCT 75927
| | || ||| || || | | || ||| ||| || || | || || |||||
Sbjct 3421304 ACAGTCCTTGTGGTTCGCCATCATTGAGTCGCAGGTGGAAACCGGCAATCCGTACATGCT 3421245
Query 75928 TTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTC 75987
| ||||||| | || |||| |||||| ||||| ||||| | || || |||||| ||
Sbjct 3421244 GTTCAAGGATTCGTGCAACAGGAAGAGCAACCAGCAGAATGTTGGCACCATCAAGTGCAG 3421185
Query 75988 AAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTT 76047
||| | ||||| ||||| | ||||| | | ||| |||| || || ||||| |
Sbjct 3421184 CAATTTGTGCACCGAAATCGTTGAGTATTCCGCGCCGGACGAGATTGCAGTGTGCAACCT 3421125
Query 76048 GGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAA 76107
|||||| || ||||| | || |||| |||| || | ||||| ||||
Sbjct 3421124 GGCATCCATTGCCCTCAACATGTTCGTCACGCCCGAGA---AGACGTATGATTTCAAAAA 3421068
Query 76108 ACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTT 76167
||| | ||| |||| |||| ||||||| |||||| ||| | ||||||| || ||
Sbjct 3421067 ACTGAAGGAAGTCACCAAGACGGTTACCAGAAATCTCAACAAGATAATTGACATCAACTT 3421008
Query 76168 TTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGG 76224
||||||| | ||||| | || |||||| || | || | || | || | ||
Sbjct 3421007 TTATCCCCTGCCAGAGACAAAG---AAATCTAATTTGAGGCATCGTCCGGTGGGCATCGG 3420951
Query 76225 TGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGC 76284
||| || ||| |||| || | | ||| | || | | ||| || || |||||
Sbjct 3420950 TGTCCAGGGTTTCGCTGACGCCCTGATTCTCATGCGATTCCCATACGAAAGCGAGGAAGC 3420891
Query 76285 CAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTG 76344
| ||||| | || || |||||||| || ||| || |||| || || ||
Sbjct 3420890 CGGTCTTTTGAATCAGCAGATATTCGAAACCATTTACTACGGCGCCTTGGAAGCCAGCTG 3420831
Query 76345 TGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGG 76404
||| |||| | | | ||||| ||||||| || | ||||| |||| | | | ||
Sbjct 3420830 TGAGCTGGCGCAGGTCGAAGGTCCCTATGAAACCTACGAGGGCAGCCCCGTGAGCAAGGG 3420771
Query 76405 GGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACGACTGGGATGTTCT 76464
| || |||| || |||||||| | ||| | | | || ||| | ||
Sbjct 3420770 AATTCTGCAGTACGACATGTGGGACAAGAAGCCCACGGACCTGTGGGATTGGCAGAAACT 3420711
Query 76465 CAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAAC 76524
||||| ||||||| || | ||| | | ||| || || | ||||| ||||| ||
Sbjct 3420710 GAAGGAGTCCATCAAGCAGCACGGTGTCAGGAACTCCCTGCTGGTTGCACCCATGCCCAC 3420651
Query 76525 AGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACAT 76584
|| ||||| || ||||| |||| || || |||| || || || |||||||| |||||
Sbjct 3420650 GGCATCCACTGCCCAAATAATGGGCAACAACGAATCTTTCGAGCCCTACACAACTAACAT 3420591
Query 76585 CTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGA 76644
||| | | || | ||||| || | |||||| | || | | | ||
Sbjct 3420590 TTACACCCGGCGCGTTCTGTCCGGTGAATTCCAGGTGGTCAACCATCATTTGTTGAGGGA 3420531
Query 76645 CCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---TCATGGTGAAAGCGGG 76701
| | | || | | | | ||| | | ||||||||| | | |||| | ||| ||
Sbjct 3420530 CTTAACCGAGCTGGATTTGTGGGACGACGATATGAAGAACCAGATCAT--TTCCAGCAGG 3420473
Query 76702 TGGTTCCATTCAAAATATCTCAG---ATATCCCAGATGATATCAAGAATCTCTACCGCAC 76758
||||| || || || || | || || |||||| | | || | |||| ||| ||
Sbjct 3420472 -GGTTCAATCCAGAACAT-TGAGGCCATTCCCCAGAAGGT-TCGCG-ATCTTTACAAGAC 3420417
Query 76759 AGTGTGGGAAATCAAGATGAAAGATGTC----ATTGACATGGCCGCAGATCGTGGTCGCT 76814
|||||||||||| |||| ||| ||| | |||||||||||||||||| |
Sbjct 3420416 CGTGTGGGAAATCTCCGTGAA----GTCCACAATTAAAATGGCCGCAGATCGTGGTGCGT 3420361
Query 76815 TCATTGATCAAAGTCAAAGTATGAATCTATTCAT---GGAAAGTCCAACGATGTCCAAGC 76871
|||| || |||||||| | || |||||| | | || | ||| | | ||| |
Sbjct 3420360 TCATCGACCAAAGTCAGTCGTTCAA--CATTCATGTGGCAGAGCCGAACTACG-GCAAAC 3420304
Query 76872 TCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCC 76931
| | || || || | ||| | |||||| || ||||| ||||| ||||||||||| |
Sbjct 3420303 TGACGTCCATTCACTTTTACTCCTGGAAAGCTGGCCTCAAGACCGGCATGTACTATCTGC 3420244
Query 76932 GATCAAAG 76939
| |||||
Sbjct 3420243 GCACAAAG 3420236
>seq5078
Length=1488007
Score = 113 bits (124), Expect = 5e-20
Identities = 332/502 (66%), Gaps = 26/502 (5%)
Strand=Plus/Plus
Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250
|||||| | |||||||| | || |||| |||||| | || || ||||||||||| ||
Sbjct 1429358 TGATGTAGCCGGGATTGATGAAGCTAAAGGGGAACTTCAGGAAATCGTGGATTTTCTGAA 1429417
Query 175251 GCAACCCGAGAGATATTTTGGAAGT--GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCG 175308
| || | ||| ||| | | || | || || ||| ||||| || || | |
Sbjct 1429418 --AGACCCACAGAAGTTTACGCGCTTGGGCGGTAAAATTCCCAAAGGCGTGCTGCTTGTG 1429475
Query 175309 GGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTC 175368
|| ||| || || || || ||||| | ||||| ||||| || |||||| | |||||
Sbjct 1429476 GGGCCGCCGGGCACTGGTAAAACCCTGTTGGCCCGCGCCATTGCAGGTGAAGCCAATGTA 1429535
Query 175369 CCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426
|| ||| | ||| ||||| | |||||||||| ||||| || ||||| |||||
Sbjct 1429536 CCGTTCTTTACCA--TCTCTGGTTCCGACTTTGTGGAAATGTTCGTAGGTGTTGGTGCAT 1429593
Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCG---AAAATCA--ACCATGTATTGTCTT 175481
| || || || | || ||| | | | ||||||| || || ||| ||||
Sbjct 1429594 CCCGTGTGCGTGACATGTTCGAA-----CAGGGTAAAAAATCAGCTCCTTGCATTATCTT 1429648
Query 175482 CATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGT-GGTATGCCAGCAAATG 175540
||||||||| |||||||| || || || || | || ||| | || | || ||||
Sbjct 1429649 CATTGATGAAATTGATGCCGTTGGTCGCCATCGTGGTGCAGGTATGGGTGGCGGC-AATG 1429707
Query 175541 ACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA---CAATG 175597
| ||| | || || ||| | || || | || ||||||||||| ||||| |||||
Sbjct 1429708 ATGAGCGCGAGCAGACACTGAACCAGATGCTGGTTGAGATGGATGGTTTTGAAAGCAATG 1429767
Query 175598 AGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCC 175657
| ||| | | | ||||| ||||| || || ||| | ||||| || | |
Sbjct 1429768 A---AGGCGTGATCCTGATTGCCGCCACCAACCGTCCAGATGTGCTTGACCCGGCATTGC 1429824
Query 175658 TTCGCCCGGGTCGTTTTGATCG 175679
| ||||| |||||||| || ||
Sbjct 1429825 TGCGCCCCGGTCGTTTCGACCG 1429846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596529115295520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |