Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5214 179 4e-40 seq5078 113 5e-20 >seq5214 Length=3698012 Score = 179 bits (198), Expect = 4e-40 Identities = 810/1268 (64%), Gaps = 37/1268 (3%) Strand=Plus/Minus Query 75689 GATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGT 75748 |||||||| | |||| ||||| || || ||||||||||| || || |||| || Sbjct 3421483 GATCTCTTCTACGCCCTCTGGATACCCGATCTTTTCATGAAACGCGTCGAGGCCAACGGG 3421424 Query 75749 CAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAG 75808 | ||||| || | ||||| |||| || || || ||| | | ||| || ||| Sbjct 3421423 GACTGGTCGCTGATGTGTCCGCACAAATGCCCCGGCCTGCACGATGTGTGGGGCGATGAG 3421364 Query 75809 TTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCC 75868 || ||| || ||||| | || || ||||||| | || || ||| || | || | Sbjct 3421363 TTCGAAAAGCTGTACACGCAATACGAGCAGGAGGGCCGTGCGAACCGGACGGT-CAAGGC 3421305 Query 75869 GCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCT 75927 | | || ||| || || | | || ||| ||| || || | || || ||||| Sbjct 3421304 ACAGTCCTTGTGGTTCGCCATCATTGAGTCGCAGGTGGAAACCGGCAATCCGTACATGCT 3421245 Query 75928 TTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTC 75987 | ||||||| | || |||| |||||| ||||| ||||| | || || |||||| || Sbjct 3421244 GTTCAAGGATTCGTGCAACAGGAAGAGCAACCAGCAGAATGTTGGCACCATCAAGTGCAG 3421185 Query 75988 AAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTT 76047 ||| | ||||| ||||| | ||||| | | ||| |||| || || ||||| | Sbjct 3421184 CAATTTGTGCACCGAAATCGTTGAGTATTCCGCGCCGGACGAGATTGCAGTGTGCAACCT 3421125 Query 76048 GGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAA 76107 |||||| || ||||| | || |||| |||| || | ||||| |||| Sbjct 3421124 GGCATCCATTGCCCTCAACATGTTCGTCACGCCCGAGA---AGACGTATGATTTCAAAAA 3421068 Query 76108 ACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTT 76167 ||| | ||| |||| |||| ||||||| |||||| ||| | ||||||| || || Sbjct 3421067 ACTGAAGGAAGTCACCAAGACGGTTACCAGAAATCTCAACAAGATAATTGACATCAACTT 3421008 Query 76168 TTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGG 76224 ||||||| | ||||| | || |||||| || | || | || | || | || Sbjct 3421007 TTATCCCCTGCCAGAGACAAAG---AAATCTAATTTGAGGCATCGTCCGGTGGGCATCGG 3420951 Query 76225 TGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGC 76284 ||| || ||| |||| || | | ||| | || | | ||| || || ||||| Sbjct 3420950 TGTCCAGGGTTTCGCTGACGCCCTGATTCTCATGCGATTCCCATACGAAAGCGAGGAAGC 3420891 Query 76285 CAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTG 76344 | ||||| | || || |||||||| || ||| || |||| || || || Sbjct 3420890 CGGTCTTTTGAATCAGCAGATATTCGAAACCATTTACTACGGCGCCTTGGAAGCCAGCTG 3420831 Query 76345 TGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGG 76404 ||| |||| | | | ||||| ||||||| || | ||||| |||| | | | || Sbjct 3420830 TGAGCTGGCGCAGGTCGAAGGTCCCTATGAAACCTACGAGGGCAGCCCCGTGAGCAAGGG 3420771 Query 76405 GGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACGACTGGGATGTTCT 76464 | || |||| || |||||||| | ||| | | | || ||| | || Sbjct 3420770 AATTCTGCAGTACGACATGTGGGACAAGAAGCCCACGGACCTGTGGGATTGGCAGAAACT 3420711 Query 76465 CAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAAC 76524 ||||| ||||||| || | ||| | | ||| || || | ||||| ||||| || Sbjct 3420710 GAAGGAGTCCATCAAGCAGCACGGTGTCAGGAACTCCCTGCTGGTTGCACCCATGCCCAC 3420651 Query 76525 AGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACAT 76584 || ||||| || ||||| |||| || || |||| || || || |||||||| ||||| Sbjct 3420650 GGCATCCACTGCCCAAATAATGGGCAACAACGAATCTTTCGAGCCCTACACAACTAACAT 3420591 Query 76585 CTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGA 76644 ||| | | || | ||||| || | |||||| | || | | | || Sbjct 3420590 TTACACCCGGCGCGTTCTGTCCGGTGAATTCCAGGTGGTCAACCATCATTTGTTGAGGGA 3420531 Query 76645 CCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---TCATGGTGAAAGCGGG 76701 | | | || | | | | ||| | | ||||||||| | | |||| | ||| || Sbjct 3420530 CTTAACCGAGCTGGATTTGTGGGACGACGATATGAAGAACCAGATCAT--TTCCAGCAGG 3420473 Query 76702 TGGTTCCATTCAAAATATCTCAG---ATATCCCAGATGATATCAAGAATCTCTACCGCAC 76758 ||||| || || || || | || || |||||| | | || | |||| ||| || Sbjct 3420472 -GGTTCAATCCAGAACAT-TGAGGCCATTCCCCAGAAGGT-TCGCG-ATCTTTACAAGAC 3420417 Query 76759 AGTGTGGGAAATCAAGATGAAAGATGTC----ATTGACATGGCCGCAGATCGTGGTCGCT 76814 |||||||||||| |||| ||| ||| | |||||||||||||||||| | Sbjct 3420416 CGTGTGGGAAATCTCCGTGAA----GTCCACAATTAAAATGGCCGCAGATCGTGGTGCGT 3420361 Query 76815 TCATTGATCAAAGTCAAAGTATGAATCTATTCAT---GGAAAGTCCAACGATGTCCAAGC 76871 |||| || |||||||| | || |||||| | | || | ||| | | ||| | Sbjct 3420360 TCATCGACCAAAGTCAGTCGTTCAA--CATTCATGTGGCAGAGCCGAACTACG-GCAAAC 3420304 Query 76872 TCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCC 76931 | | || || || | ||| | |||||| || ||||| ||||| ||||||||||| | Sbjct 3420303 TGACGTCCATTCACTTTTACTCCTGGAAAGCTGGCCTCAAGACCGGCATGTACTATCTGC 3420244 Query 76932 GATCAAAG 76939 | ||||| Sbjct 3420243 GCACAAAG 3420236 >seq5078 Length=1488007 Score = 113 bits (124), Expect = 5e-20 Identities = 332/502 (66%), Gaps = 26/502 (5%) Strand=Plus/Plus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||| | |||||||| | || |||| |||||| | || || ||||||||||| || Sbjct 1429358 TGATGTAGCCGGGATTGATGAAGCTAAAGGGGAACTTCAGGAAATCGTGGATTTTCTGAA 1429417 Query 175251 GCAACCCGAGAGATATTTTGGAAGT--GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCG 175308 | || | ||| ||| | | || | || || ||| ||||| || || | | Sbjct 1429418 --AGACCCACAGAAGTTTACGCGCTTGGGCGGTAAAATTCCCAAAGGCGTGCTGCTTGTG 1429475 Query 175309 GGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTC 175368 || ||| || || || || ||||| | ||||| ||||| || |||||| | ||||| Sbjct 1429476 GGGCCGCCGGGCACTGGTAAAACCCTGTTGGCCCGCGCCATTGCAGGTGAAGCCAATGTA 1429535 Query 175369 CCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426 || ||| | ||| ||||| | |||||||||| ||||| || ||||| ||||| Sbjct 1429536 CCGTTCTTTACCA--TCTCTGGTTCCGACTTTGTGGAAATGTTCGTAGGTGTTGGTGCAT 1429593 Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCG---AAAATCA--ACCATGTATTGTCTT 175481 | || || || | || ||| | | | ||||||| || || ||| |||| Sbjct 1429594 CCCGTGTGCGTGACATGTTCGAA-----CAGGGTAAAAAATCAGCTCCTTGCATTATCTT 1429648 Query 175482 CATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGT-GGTATGCCAGCAAATG 175540 ||||||||| |||||||| || || || || | || ||| | || | || |||| Sbjct 1429649 CATTGATGAAATTGATGCCGTTGGTCGCCATCGTGGTGCAGGTATGGGTGGCGGC-AATG 1429707 Query 175541 ACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA---CAATG 175597 | ||| | || || ||| | || || | || ||||||||||| ||||| ||||| Sbjct 1429708 ATGAGCGCGAGCAGACACTGAACCAGATGCTGGTTGAGATGGATGGTTTTGAAAGCAATG 1429767 Query 175598 AGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCC 175657 | ||| | | | ||||| ||||| || || ||| | ||||| || | | Sbjct 1429768 A---AGGCGTGATCCTGATTGCCGCCACCAACCGTCCAGATGTGCTTGACCCGGCATTGC 1429824 Query 175658 TTCGCCCGGGTCGTTTTGATCG 175679 | ||||| |||||||| || || Sbjct 1429825 TGCGCCCCGGTCGTTTCGACCG 1429846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596529115295520