Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_020853.1 Length=56958 Score E Sequences producing significant alignments: (Bits) Value seq4667 154 5e-33 seq30 134 5e-27 >seq4667 Length=397774 Score = 154 bits (170), Expect = 5e-33 Identities = 395/591 (67%), Gaps = 29/591 (5%) Strand=Plus/Minus Query 44405 ATCGCATCGGCATAGACACGGACCTCTTTCTGGGCATGTTCATCGGCCCGCAGGCGCAGG 44464 ||| | || |||||| | |||| || | ||| || || || ||||||| ||| Sbjct 74474 ATCACTTCCGCATAGGCGCGGATTTCGTACTGCGCGTGCGGGTCAAGCCGCAGGGCAAGG 74415 Query 44465 AAGTGGAAGAGGTTGTGTAGGTCAATCTTCCAATACCATTGGGTGTAGACATTGACCGGC 44524 ||||| | ||||| || || ||||||||||| |||||||| |||||| || | || | Sbjct 74414 AAGTGCATCAGGTTATGCAGATCAATCTTCCAGTACCATTGCGTGTAGGTGTTCAGCGTC 74355 Query 44525 AAGTTCATGCGGGCCAGTTCGCGGGCCAAGCCGT--CCT--GACCGTCATCGCTGATCAT 44580 | ||| || ||||||||||| || |||| |||| ||| | |||| || | ||| Sbjct 74354 AGGTTGATACGGGCCAGTTCACGCGCCAGACCGTAGCCTTCGTCCGTATTC----AGCAT 74299 Query 44581 CTCTTCATAGTGATCATAGGCGTTCTGGGCGTCGTTCATCAGGTAGTGTAGGACCCGCTG 44640 | |||||| | |||| | | |||||| || || | || ||| | Sbjct 74298 TTTTTCATAATTGCTGTAGGTGCGCATGGCGTCATTGCGCAAAATATCCAGCACCTCC-- 74241 Query 44641 AGCCTCAGCC---CCCTGAAGAACATTATCATCGCGGCCCTGCCCGTTCACCTTCGA-CT 44696 ||| | ||| || | || || || |||||||||| ||| | |||| || Sbjct 74240 -GCCGCGGCCTCGCCTTCCAGCACGGCCCCA---CGGCCCTGCCGGTTGAT-TTCGCTCT 74186 Query 44697 GGGATGCGAGATCTTGGGGACTTGGGATGTAGAACTCACCCGGCATGATCGAATAGCGGG 44756 | | || | | || || || | |||||||||| || || |||||||||| Sbjct 74185 GCGCCGCCATGTGTTCAGGCGCGGGCAAATAGAACTCACTGTCCAGAATGGAATAGCGGG 74126 Query 44757 CTGAGTATTCATTCACGTTGGCCGTCCGGTGACGGATCCATTGGCGGGCCACAAACACGG 44816 | || ||||| |||||| ||||| | ||||| || ||||| || ||||| | || | || Sbjct 74125 CAGAATATTCGTTCACGCTGGCCATACGGTGGCGAATCCACTGCCGGGCAATGAAGATGG 74066 Query 44817 GCAGTTTGACATGAAGTTTGATCTCACAACCCTCAAACGGGCTGGTGTGCCAATGGCGCA 44876 |||||||||| |||| ||||||||||| ||||||||| || || | || |||| Sbjct 74065 GCAGTTTGACGTGAAACTTGATCTCACACATCTCAAACGGTGAGGAATGGCGGTGCCGCA 74006 Query 44877 TAAGGTAGCGGATTAGGTCGCGGTCCTTGCTGACACCCT--TGGTGCCCTGACCGTAGGA 44934 | ||||| ||||| || | ||| | | || ||| | ||||||| | |||||||| Sbjct 74005 TCAGGTAACGGATCAG--CCCGGCATCTTCAGAAACCTTGCGGGTGCCCCGGCCGTAGGA 73948 Query 44935 TACGCGGGCCATCTGGACGATAGCG---CCGTCCGTGCCCATGTAGTCGAT 44982 ||||| || ||| || || ||| ||||| |||||||| || || Sbjct 73947 AACGCGTGCTGCCTGCACAATGGCGGAATCGTCC---CCCATGTAATCAAT 73900 >seq30 Length=443100 Score = 134 bits (148), Expect = 5e-27 Identities = 405/611 (66%), Gaps = 27/611 (4%) Strand=Plus/Minus Query 44411 TCGGCATAGACACGGACCTCTTTCTGGGCATGTTCATCGGCCCGCAGGCGCAGGAAGTGG 44470 || ||||| || |||| || | ||| ||||| || ||||||| ||| ||||| Sbjct 64007 TCTGCATAAACCCGGATTTCATACTGCGCATGCGGGTCTATCCGCAGGGCCAGAAAGTGC 63948 Query 44471 AAGAGGTTGTGTAGGTCAATCTTCCAATACCATTGGGTGTAGACATTGACCGGCAAGTTC 44530 | |||||| || ||||| || ||||| ||||| ||||| ||| || | | || || Sbjct 63947 ATGAGGTTATGGAGGTCTATTTTCCAGTACCACTGGGTATAGGTGTTCAGGGTCAGATTG 63888 Query 44531 ATGCGGGCCAGTTCGCGGGCCAAGCCGT--CC--TGACCGTCATCGCTGATCATCTCTTC 44586 || || ||||||| || ||||| |||| || | ||| |||| | ||| | ||| Sbjct 63887 ATACGCCCCAGTTCACGCGCCAAACCGTATCCATTTTCCG-CATCC---AGCATTTTTTC 63832 Query 44587 ATAGTGATCATAGGCGTTCTGGGCGTCGTTCATCAGGTAGTGTAGG---ACCCGCTGA-G 44642 || | | ||| | | | ||| || |||| | || || | || ||| | Sbjct 63831 GTAATCACGATACGTGCGCATGGCATC----ATCACGCAGGATATCCAAAACCTCTGCTG 63776 Query 44643 CCTCAGCCCCCTGAAGA-ACATTATCATCGCGGCCCTGCCCGTTCACCTTCGA-CTGGGA 44700 ||| | ||| | | | | | | |||||||||| ||| || |||| ||||| Sbjct 63775 CCTG----CTCTGGGGCCAGAATCTGCCCTCGGCCCTGCCGGTTTAC-TTCGCTCTGGGC 63721 Query 44701 TGCGAGATCTTGGGGACTTGGGATGTAGAACTCACCCGGCATGATCGAATAGCGGGCTGA 44760 || | || | || || | ||| || |||| || || |||||||| || || Sbjct 63720 GGCCATATGCTCTGGCGCAGGCAGGTAAAATTCACTGTCCAGAATGGAATAGCGTGCCGA 63661 Query 44761 GTATTCATTCACGTTGGCCGTCCGGTGACGGATCCATTGGCGGGCCACAAACACGGGCAG 44820 ||||| |||||| ||||| | || || || ||||| || || |||||||| | ||||| Sbjct 63660 ATATTCGTTCACGCTGGCCATGCGATGGCGAATCCACTGCCGCGCCACAAAAATCGGCAG 63601 Query 44821 TTTGACATGAAGTTTGATCTCACAACCCTCAAACGGGCTGGTGTGCCAATGGCGCATAAG 44880 |||||| |||| ||| |||||||| |||||||| || || | ||||||||| || Sbjct 63600 TTTGACGTGAAATTTCATCTCACACATTTCAAACGGTGAGGAATGGCGATGGCGCATCAG 63541 Query 44881 GTAGCGGATTAGGTCGCGGTCCTTGCTGACACCCT--TGGTGCCCTGACCGTAGGATACG 44938 || ||||| | | | || ||| |||| ||| | ||||||| ||||||| || ||| Sbjct 63540 ATACCGGATCA-GCCCCGCATCTT-CTGAAACCTTGCGGGTGCCCCGACCGTATGAAACG 63483 Query 44939 CGGGCCATCTGGACGATAGCGCCGTCCGTGCCCATGTAGTCGATTGGTCGGACAAAGCCA 44998 || || ||| || || || | || ||||| ||||| || || | || ||| Sbjct 63482 CGTGCAGCCTGCACAATGGCAGCATCATCCCCCATATAGTCAATAACACGCAAGAACCCA 63423 Query 44999 TGATCTAGGAC 45009 ||||| || || Sbjct 63422 TGATCCAGCAC 63412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182132257290160