Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5214 96.9 6e-15 seq5277 95.1 2e-14 >seq5214 Length=3698012 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || | || || || ||||| | ||| || ||| ||||| || || Sbjct 3523195 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 3523136 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | || |||| || || ||||| || || | | ||| || || || || Sbjct 3523135 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 3523076 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||| || || || || ||| ||||| |||||||| |||| ||| || Sbjct 3523075 AATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGAC 3523016 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| ||||| || || || | || |||| ||| |||||||| || Sbjct 3523015 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 3522965 >seq5277 Length=7425378 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | || || || | |||| ||| || || || || || Sbjct 1193925 ATGCCACCACGAAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCG 1193866 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || |||| ||| |||||||||||||| | | ||| || || || Sbjct 1193865 GAAAGAGTGCGACCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGG 1193806 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || ||||| |||||||| || ||||| || | || Sbjct 1193805 GGAATGCCCTCCTTGTCCTGAATTTTGGCCTTTACATTCTCAATGGTATCAGAGGGCTCA 1193746 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| || |||||||| || || | ||| |||||||| Sbjct 1193745 ACTTCAAGGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 1193696 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || || || || || ||||| | ||| || || || ||||| Sbjct 1193241 ATGCCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCC 1193182 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || |||| ||| |||||||||||||| | | ||| || || || Sbjct 1193181 GACAACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGG 1193122 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || || || || || ||||| || | ||| Sbjct 1193121 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCA 1193062 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || || || | || || | ||| |||||||| Sbjct 1193061 ACCTCCAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905074575208200