Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq4311 109 2e-19 >seq4311 Length=289319 Score = 109 bits (120), Expect = 2e-19 Identities = 219/323 (68%), Gaps = 4/323 (1%) Strand=Plus/Plus Query 40418 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40477 |||| |||| |||||||| || ||| |||||||| | || || || || Sbjct 204773 TCCGAACGTGATAATCTGCGCCACACGGTCCGCCCCGTATTCACGCCGCACATAGGCTAT 204832 Query 40478 CACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGC 40535 ||||||| | || || || | || ||||||||| || | || ||||||||||| || Sbjct 204833 CACCTCGTCTCGCCGGTCCTGACA--GAAGTCGATATCAAAGTCAGGCATGGACACACGT 204890 Query 40536 TCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40595 || || ||||| ||||| ||||| | || | | |||||| || | || ||||| Sbjct 204891 TCAGGATTCAGAAACCGTTCGAACAGCAGATTGAACGGCAGCGGATCAATATCTGTGATG 204950 Query 40596 CCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACG 40655 | | | ||| |||| ||||| || | || || ||||| || || ||| || Sbjct 204951 GTCAACGCCCATGCGGCCAGAGAACCTGCACCCGACCCACGCCCCGGCCCCACCGGGATA 205010 Query 40656 CCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCC 40715 | | | ||||| |||| ||||||||||||| |||| | |||||| ||||||||| Sbjct 205011 TCATGCGCCTTCCCCCACTGGATGAAGTCCGCAACGATCATGAAGTAACCGGGGAAGCCC 205070 Query 40716 ATCTGGATGATCATGTCGATCTC 40738 |||| | ||| || || | ||| Sbjct 205071 ATCTTGGAGATAATATCCAGCTC 205093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163874234449372