Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq5221 143 8e-29
seq5078 129 2e-24
seq5075 100 8e-16
seq4086 93.3 1e-13
seq4085 93.3 1e-13
>seq5221
Length=5268673
Score = 143 bits (158), Expect = 8e-29
Identities = 196/268 (73%), Gaps = 8/268 (3%)
Strand=Plus/Minus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| |||||| | |||||||||||| ||||| ||| | ||| || ||||| |||
Sbjct 254509 TCCATAGCCTTGATGAGACGACGCTGAATGTAACCGGTTTCGGCTGTCTTCACAGCGGTA 254450
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693
||||| ||||| ||||||| ||||| || ||||| | | ||| || ||| || ||
Sbjct 254449 TCAATCAGACCCTCACGACCGCCCATGGCGTGGAAATAGAACTC-GGAGGGCGTCAGGCC 254391
Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750
| | | | ||| |||| ||||| ||||||| |||||| || ||||||| |||| |
Sbjct 254390 GGCCAGATACGAGTTCTCCACGAAGCCACGCGACTCGGGACCGTAATCGTC---CTTGAT 254334
Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810
||||| ||||| || | || | ||||| ||||| ||||| || || ||||||||
Sbjct 254333 GAAGTGGGGCAGCGTGCGCTTGCGGAATCCGTAGGGGATTCGCTTACCCTCCACGTTCTG 254274
Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAA 302838
||| |||| || | ||| | ||| |||
Sbjct 254273 CTGGCCCACACAAGCAATAACCTGGGAA 254246
>seq5078
Length=1488007
Score = 129 bits (142), Expect = 2e-24
Identities = 232/330 (70%), Gaps = 12/330 (4%)
Strand=Plus/Minus
Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGA--ATTTTGTCTCGCAATT 289086
|||||| ||||||||||| |||||||| || | || |||| ||||| | | | ||
Sbjct 1429673 ACCAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTACC-CTGTT 1429615
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
| || | || | ||||||||||| |||| ||| || ||||||| ||||| || |||
Sbjct 1429614 -CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAA 1429556
Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206
| || | || ||| | |||||| ||||| ||||| | || | |||| || ||
Sbjct 1429555 CCAGAGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 1429496
Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTT---GCCCCAGCA 289263
||||| || || || || ||| | | || || ||||||| | |||| |||| |||
Sbjct 1429495 TTACCAGTGCCCGGCGGCCCCACAAGCAGCAC-GCCTTTGGGAATTTTACCGCCCAAGC- 1429438
Query 289264 GACTTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322
| || | |||| ||| ||||| | ||| || || ||||||| |||||| ||| ||
Sbjct 1429437 -GCGTAAACTTCTGTGGG-TCTTTCAGAAAATCCACGATTTCCTGAAGTTCCCCTTTAGC 1429380
Query 289323 CTCATCACATCCTGCTACATCAGCAAAAGT 289352
|||||| || ||||||||| |||| ||
Sbjct 1429379 TTCATCAATCCCGGCTACATCATCAAACGT 1429350
>seq5075
Length=1967217
Score = 100 bits (110), Expect = 8e-16
Identities = 147/203 (72%), Gaps = 4/203 (2%)
Strand=Plus/Plus
Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904
|| ||||||||| || |||||||||||||| |||||||| || || || || ||
Sbjct 1193127 ATTGTCATACGAGAAGGGATAGCATGGGGATTAATGATGATATCCGGGGCCAAGCCCTC- 1193185
Query 251905 GCA-GTGAAGGGCATATCCTTTTCCTCAATAAT-GTTTCCAATAGTTCCCTTTTGTCCGT 251962
||| ||||||| |||||||| || | ||| | | | || ||||||||||||||||
Sbjct 1193186 GCACGTGAAGGCCATATCCTCTT-GACGATACTGGATACCGCATGTTCCCTTTTGTCCGT 1193244
Query 251963 GACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTAC 252022
|||||||| ||||||||| || || ||| || || || | |||| ||| |
Sbjct 1193245 GACGAGAAGCGAACTTATCGCCGATCTGCGGAATACGCACGGAGCGCACTCGAATCTTGC 1193304
Query 252023 AGAAGTTGTAACCATCACCGTTG 252045
|||| ||||| || || | ||||
Sbjct 1193305 AGAACTTGTAGCCCTCGCTGTTG 1193327
Score = 84.2 bits (92), Expect = 6e-11
Identities = 176/260 (68%), Gaps = 8/260 (3%)
Strand=Plus/Plus
Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463
||||||| ||||| || || | ||| |||| ||| | |||||| | || | ||
Sbjct 1192629 GCGATAATGCCACAGAAGTTGCAGATATGCACGCGGTACGGATCAGAGACCTCGAAAAGA 1192688
Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523
|| | | ||| | | || ||||| || ||| ||||||||||||||| |||||
Sbjct 1192689 CGCTCTCTCAAGAATTGGGCAGCGCCGTGGGAGATCTGACAATCACGCTCCATCTCACCA 1192748
Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACG----AGTGAGATTAAC 251579
||||| | |||||||| || || | |||||| |||||||| || || | |||
Sbjct 1192749 AAACGCAAGCCACCATCTCGCGCACGACCCTCCATGGGCTGACGCACCAG-GATCTGAAC 1192807
Query 251580 CATAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTA 251639
|||||| || || ||| ||| || | ||||| |||||||||||||| ||
Sbjct 1192808 ---AGGACCACGGGCACGCGAATGGATCTTGTCGTCCACCATGTGCTTGAGACGCTGATA 1192864
Query 251640 GAATGCGGGACCGATGAAGA 251659
| | | ||| || | |||||
Sbjct 1192865 GTAGGTGGGTCCCAAGAAGA 1192884
>seq4086
Length=80244
Score = 93.3 bits (102), Expect = 1e-13
Identities = 223/327 (68%), Gaps = 8/327 (2%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG-C 289088
|| || || ||||||||||||||||| || | ||||| | | || ||| || | |
Sbjct 8706 CCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTT-TCTTGCCCTGCTC 8648
Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148
|| | || | || ||||| || || | ||| || ||||||| ||||| ||||| |
Sbjct 8647 GAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAGAGCC 8588
Query 289149 GGATACT-TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
||| | |||| ||| | ||||| ||||| || || | || | |||||| || ||||
Sbjct 8587 GGAAATGGTGAA-GAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGCGTCT 8529
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266
||||||| || || || || | ||||| || || || | ||| | ||||| |
Sbjct 8528 TACCTGTGCCCGGAGGACCACACAGCAGAACCCCTTTAGGGATTTTACCGCCCAGACGGG 8469
Query 289267 TTATATTTCTCAGGGCTCTTTAA-AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325
| | |||||| ||| ||||||| || || |||||||||| | || || || ||
Sbjct 8468 TGA-ATTTCTGCGGG-TCTTTAAGGAAATCGACAATTTCCTGCAACTCGCTCTTGGCTTC 8411
Query 289326 ATCACATCCTGCTACATCAGCAAAAGT 289352
|||| || || ||||| |||| ||
Sbjct 8410 ATCAATGCCGGCCACATCCTCAAACGT 8384
>seq4085
Length=47143
Score = 93.3 bits (102), Expect = 1e-13
Identities = 223/327 (68%), Gaps = 8/327 (2%)
Strand=Plus/Minus
Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG-C 289088
|| || || ||||||||||||||||| || | ||||| | | || ||| || | |
Sbjct 25164 CCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTT-TCTTGCCCTGCTC 25106
Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148
|| | || | || ||||| || || | ||| || ||||||| ||||| ||||| |
Sbjct 25105 GAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAGAGCC 25046
Query 289149 GGATACT-TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207
||| | |||| ||| | ||||| ||||| || || | || | |||||| || ||||
Sbjct 25045 GGAAATGGTGAA-GAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGCGTCT 24987
Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266
||||||| || || || || | ||||| || || || | ||| | ||||| |
Sbjct 24986 TACCTGTGCCCGGAGGACCACACAGCAGAACCCCTTTAGGGATTTTACCGCCCAGACGGG 24927
Query 289267 TTATATTTCTCAGGGCTCTTTAA-AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325
| | |||||| ||| ||||||| || || |||||||||| | || || || ||
Sbjct 24926 TGA-ATTTCTGCGGG-TCTTTAAGGAAATCGACAATTTCCTGCAACTCGCTCTTGGCTTC 24869
Query 289326 ATCACATCCTGCTACATCAGCAAAAGT 289352
|||| || || ||||| |||| ||
Sbjct 24868 ATCAATGCCGGCCACATCCTCAAACGT 24842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471715221747573
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |