Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5221 143 8e-29 seq5078 129 2e-24 seq5075 100 8e-16 seq4086 93.3 1e-13 seq4085 93.3 1e-13 >seq5221 Length=5268673 Score = 143 bits (158), Expect = 8e-29 Identities = 196/268 (73%), Gaps = 8/268 (3%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | |||||||||||| ||||| ||| | ||| || ||||| ||| Sbjct 254509 TCCATAGCCTTGATGAGACGACGCTGAATGTAACCGGTTTCGGCTGTCTTCACAGCGGTA 254450 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 ||||| ||||| ||||||| ||||| || ||||| | | ||| || ||| || || Sbjct 254449 TCAATCAGACCCTCACGACCGCCCATGGCGTGGAAATAGAACTC-GGAGGGCGTCAGGCC 254391 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 | | | | ||| |||| ||||| ||||||| |||||| || ||||||| |||| | Sbjct 254390 GGCCAGATACGAGTTCTCCACGAAGCCACGCGACTCGGGACCGTAATCGTC---CTTGAT 254334 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||||| ||||| || | || | ||||| ||||| ||||| || || |||||||| Sbjct 254333 GAAGTGGGGCAGCGTGCGCTTGCGGAATCCGTAGGGGATTCGCTTACCCTCCACGTTCTG 254274 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAA 302838 ||| |||| || | ||| | ||| ||| Sbjct 254273 CTGGCCCACACAAGCAATAACCTGGGAA 254246 >seq5078 Length=1488007 Score = 129 bits (142), Expect = 2e-24 Identities = 232/330 (70%), Gaps = 12/330 (4%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGA--ATTTTGTCTCGCAATT 289086 |||||| ||||||||||| |||||||| || | || |||| ||||| | | | || Sbjct 1429673 ACCAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTACC-CTGTT 1429615 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | || | || | ||||||||||| |||| ||| || ||||||| ||||| || ||| Sbjct 1429614 -CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAA 1429556 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || | || ||| | |||||| ||||| ||||| | || | |||| || || Sbjct 1429555 CCAGAGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 1429496 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTT---GCCCCAGCA 289263 ||||| || || || || ||| | | || || ||||||| | |||| |||| ||| Sbjct 1429495 TTACCAGTGCCCGGCGGCCCCACAAGCAGCAC-GCCTTTGGGAATTTTACCGCCCAAGC- 1429438 Query 289264 GACTTATATTTCTCAGGGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 | || | |||| ||| ||||| | ||| || || ||||||| |||||| ||| || Sbjct 1429437 -GCGTAAACTTCTGTGGG-TCTTTCAGAAAATCCACGATTTCCTGAAGTTCCCCTTTAGC 1429380 Query 289323 CTCATCACATCCTGCTACATCAGCAAAAGT 289352 |||||| || ||||||||| |||| || Sbjct 1429379 TTCATCAATCCCGGCTACATCATCAAACGT 1429350 >seq5075 Length=1967217 Score = 100 bits (110), Expect = 8e-16 Identities = 147/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| || |||||||||||||| |||||||| || || || || || Sbjct 1193127 ATTGTCATACGAGAAGGGATAGCATGGGGATTAATGATGATATCCGGGGCCAAGCCCTC- 1193185 Query 251905 GCA-GTGAAGGGCATATCCTTTTCCTCAATAAT-GTTTCCAATAGTTCCCTTTTGTCCGT 251962 ||| ||||||| |||||||| || | ||| | | | || |||||||||||||||| Sbjct 1193186 GCACGTGAAGGCCATATCCTCTT-GACGATACTGGATACCGCATGTTCCCTTTTGTCCGT 1193244 Query 251963 GACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTAC 252022 |||||||| ||||||||| || || ||| || || || | |||| ||| | Sbjct 1193245 GACGAGAAGCGAACTTATCGCCGATCTGCGGAATACGCACGGAGCGCACTCGAATCTTGC 1193304 Query 252023 AGAAGTTGTAACCATCACCGTTG 252045 |||| ||||| || || | |||| Sbjct 1193305 AGAACTTGTAGCCCTCGCTGTTG 1193327 Score = 84.2 bits (92), Expect = 6e-11 Identities = 176/260 (68%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||||| ||||| || || | ||| |||| ||| | |||||| | || | || Sbjct 1192629 GCGATAATGCCACAGAAGTTGCAGATATGCACGCGGTACGGATCAGAGACCTCGAAAAGA 1192688 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 || | | ||| | | || ||||| || ||| ||||||||||||||| ||||| Sbjct 1192689 CGCTCTCTCAAGAATTGGGCAGCGCCGTGGGAGATCTGACAATCACGCTCCATCTCACCA 1192748 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACG----AGTGAGATTAAC 251579 ||||| | |||||||| || || | |||||| |||||||| || || | ||| Sbjct 1192749 AAACGCAAGCCACCATCTCGCGCACGACCCTCCATGGGCTGACGCACCAG-GATCTGAAC 1192807 Query 251580 CATAGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTA 251639 |||||| || || ||| ||| || | ||||| |||||||||||||| || Sbjct 1192808 ---AGGACCACGGGCACGCGAATGGATCTTGTCGTCCACCATGTGCTTGAGACGCTGATA 1192864 Query 251640 GAATGCGGGACCGATGAAGA 251659 | | | ||| || | ||||| Sbjct 1192865 GTAGGTGGGTCCCAAGAAGA 1192884 >seq4086 Length=80244 Score = 93.3 bits (102), Expect = 1e-13 Identities = 223/327 (68%), Gaps = 8/327 (2%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG-C 289088 || || || ||||||||||||||||| || | ||||| | | || ||| || | | Sbjct 8706 CCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTT-TCTTGCCCTGCTC 8648 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || | || | || ||||| || || | ||| || ||||||| ||||| ||||| | Sbjct 8647 GAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAGAGCC 8588 Query 289149 GGATACT-TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 ||| | |||| ||| | ||||| ||||| || || | || | |||||| || |||| Sbjct 8587 GGAAATGGTGAA-GAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGCGTCT 8529 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 ||||||| || || || || | ||||| || || || | ||| | ||||| | Sbjct 8528 TACCTGTGCCCGGAGGACCACACAGCAGAACCCCTTTAGGGATTTTACCGCCCAGACGGG 8469 Query 289267 TTATATTTCTCAGGGCTCTTTAA-AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | | |||||| ||| ||||||| || || |||||||||| | || || || || Sbjct 8468 TGA-ATTTCTGCGGG-TCTTTAAGGAAATCGACAATTTCCTGCAACTCGCTCTTGGCTTC 8411 Query 289326 ATCACATCCTGCTACATCAGCAAAAGT 289352 |||| || || ||||| |||| || Sbjct 8410 ATCAATGCCGGCCACATCCTCAAACGT 8384 >seq4085 Length=47143 Score = 93.3 bits (102), Expect = 1e-13 Identities = 223/327 (68%), Gaps = 8/327 (2%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG-C 289088 || || || ||||||||||||||||| || | ||||| | | || ||| || | | Sbjct 25164 CCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTT-TCTTGCCCTGCTC 25106 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || | || | || ||||| || || | ||| || ||||||| ||||| ||||| | Sbjct 25105 GAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAGAGCC 25046 Query 289149 GGATACT-TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 ||| | |||| ||| | ||||| ||||| || || | || | |||||| || |||| Sbjct 25045 GGAAATGGTGAA-GAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGCGTCT 24987 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 ||||||| || || || || | ||||| || || || | ||| | ||||| | Sbjct 24986 TACCTGTGCCCGGAGGACCACACAGCAGAACCCCTTTAGGGATTTTACCGCCCAGACGGG 24927 Query 289267 TTATATTTCTCAGGGCTCTTTAA-AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | | |||||| ||| ||||||| || || |||||||||| | || || || || Sbjct 24926 TGA-ATTTCTGCGGG-TCTTTAAGGAAATCGACAATTTCCTGCAACTCGCTCTTGGCTTC 24869 Query 289326 ATCACATCCTGCTACATCAGCAAAAGT 289352 |||| || || ||||| |||| || Sbjct 24868 ATCAATGCCGGCCACATCCTCAAACGT 24842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471715221747573