Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq4311 95.1 4e-15 >seq4311 Length=289319 Score = 95.1 bits (104), Expect = 4e-15 Identities = 216/323 (67%), Gaps = 4/323 (1%) Strand=Plus/Plus Query 40166 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40225 |||| |||| |||||||| || ||| |||||||| | || || || || Sbjct 204773 TCCGAACGTGATAATCTGCGCCACACGGTCCGCCCCGTATTCACGCCGCACATAGGCTAT 204832 Query 40226 GACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGC 40283 |||||| | || || || | || ||||||||| || | || ||||||||||| || Sbjct 204833 CACCTCGTCTCGCCGGTCCTGACA--GAAGTCGATATCAAAGTCAGGCATGGACACACGT 204890 Query 40284 TCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40343 || || ||||| || || ||||| | || | | |||||| || | || ||||| Sbjct 204891 TCAGGATTCAGAAACCGTTCGAACAGCAGATTGAACGGCAGCGGATCAATATCTGTGATG 204950 Query 40344 CCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACC 40403 | | | ||| |||| ||||| || | || || ||||| || || ||| || Sbjct 204951 GTCAACGCCCATGCGGCCAGAGAACCTGCACCCGACCCACGCCCCGGCCCCACCGGGATA 205010 Query 40404 CCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCC 40463 | | | ||||| |||| ||||||||||||| |||| | |||||| ||||| ||| Sbjct 205011 TCATGCGCCTTCCCCCACTGGATGAAGTCCGCAACGATCATGAAGTAACCGGGGAAGCCC 205070 Query 40464 ATCTGGATGATCATGTCGATCTC 40486 |||| | ||| || || | ||| Sbjct 205071 ATCTTGGAGATAATATCCAGCTC 205093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163314270552222