Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5277 165 1e-34 seq5039 141 1e-27 seq5242 138 1e-26 seq5214 125 9e-23 seq5283 123 3e-22 seq5221 100 3e-15 seq4674 93.3 5e-13 >seq5277 Length=7425378 Score = 165 bits (182), Expect = 1e-34 Identities = 247/347 (71%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954 ||| ||||| ||| |||||||||||| | ||| |||||||||| | | ||| |||| Sbjct 4991044 GGGACCGCCAGGCGTGGGCAAGACCACCACGATCCAGTGTCTGGCGAGGATTCTCCTGGG 4990985 Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014 | | | | ||||| |||||||| || || || || | ||||| || |||| || Sbjct 4990984 AGACAGCTACAAAGAGGCTGTGCTCGAGCTGAATGCCTCCAATGAGCGAGGAATCGATGT 4990925 Query 1574015 CGTGCGCAAGATCATCAAGCACCACGCCTC-CAAGAGGATCGACCT-GCCGCCCGGACGC 1574072 |||||||| | |||||| ||| ||| ||| ||| | ||||| ||| || Sbjct 4990924 GGTGCGCAACAAGATCAAGATGTTTGCCCAGCAAAAGGT--GACATTGCCGCGCGGCCGG 4990867 Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132 |||||| | | || || |||||||| ||| || | ||| || ||||||||||| ||| Sbjct 4990866 CACAAGATCGTGATACTGGACGAGGCGGACAGCATGACGGAGGGTGCCCAGCAGGCGCTG 4990807 Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192 || ||||||||| | ||| || ||| |||||||| |||||||| |||||||| Sbjct 4990806 CGCCGCACCATGGAGATCTACAGCAGCACCACGCGCTTCGCCCTGGCCTGCAACACCAGC 4990747 Query 1574193 TCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTT 1574239 || | |||||||| || ||||| ||||||||||| |||| || Sbjct 4990746 GAGAAGATCATCGAGCCCATCCAATCGCGCTGCGCCATGTTGCGGTT 4990700 >seq5039 Length=2173386 Score = 141 bits (156), Expect = 1e-27 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| || ||||| ||||||| || || | ||||| ||| || Sbjct 994201 AGAAGCGCACGGATGACATTATCTCGTGGGATGCCGATTTCCTGAAGGTCGACCAGGGCA 994142 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || ||| | || || || |||||||| || ||||||||| ||||| || ||| Sbjct 994141 CTCTGTTCGAGCTCATACTGGCTGCCAACTATCTGGACATCAAGGGCCTGCTGGAGCTTA 994082 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | |||||||||||||||||||||||| | || ||||||||||||||||||| Sbjct 994081 CCTGCAAGACGGTGGCCAACATGATCAAGGGCAAGACTCCGGAGGAGATCCGCAAGACCT 994022 Query 1592286 TTAACATCAAG 1592296 | ||||||||| Sbjct 994021 TCAACATCAAG 994011 >seq5242 Length=5320397 Score = 138 bits (152), Expect = 1e-26 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| | |||||| |||||||||||||||||||| ||| | |||| | | | Sbjct 3388281 CCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCCGTGATCT 3388340 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||||| ||||||| | |||||||||| |||||||| ||| |||||| | Sbjct 3388341 GCACCTCCTGGCTGAACCGCTCCACCAGGTTCTCATTGACGATGCCATCGGAGGCGGCAA 3388400 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT-GG 869809 | || ||||| |||||| ||| ||||| ||||||||||| |||| ||||| || Sbjct 3388401 AGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCGTCGTCCTTGAGGCGGTGCCAGTCGG 3388460 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 | | ||| | || ||||||||||| ||||||||| |||||||| |||| Sbjct 3388461 TCAG-GTCCTTGGACAGATCCACCTCCTCTACGGTCCAGAAAGAGGCCTCAGCCT 3388514 Score = 136 bits (150), Expect = 5e-26 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||||||||| ||||| || ||||||| || || | | || || ||| || Sbjct 3559366 AGAAGCGCACCGATGACATATCCTCGTGGGATGCCGACTTCCTCAAGGTGGACCAGGGCA 3559307 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 |||| || ||| ||||||| |||||||| |||||| ||||| || |||||| || | Sbjct 3559306 CCCTGTTCGAGCTGATCCTGGCCGCCAATTACCTCAACATCCAGGGTCTGCTGGACGTCA 3559247 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| | ||||||||||||||||||||||||||||| |||| |||||| | || | Sbjct 3559246 CCTGCAAAACGGTGGCCAACATGATCAAGGGCAAGTCGCCGCAGGACATCCGCGACACTT 3559187 Query 1592286 TTAACATCAA 1592295 | |||||| Sbjct 3559186 TCGCCATCAA 3559177 Score = 129 bits (142), Expect = 7e-24 Identities = 195/276 (71%), Gaps = 5/276 (2%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | || |||||||| ||||| |||||| |||| || || ||||| || ||| Sbjct 3387995 TGCAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGACCG 3388054 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 |||||||| ||||| || |||| | ||| ||||| ||| ||||||||||| |||||| Sbjct 3388055 CGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCG 3388114 Query 869294 GCAAAGCCGATGAGCCGCTCGGC-AAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCAT 869352 ||||| |||||| ||||| | ||| | ||| || | |||||| || Sbjct 3388115 GCAAATGCGATGATGCGCTCCCCGAAATTGGCCGA----CTTGGAGGAGATCCAGGACAG 3388170 Query 869353 CGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 869412 |||||||| ||||| | |||||| ||||| ||| ||||||||| || |||| || Sbjct 3388171 AGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTCTCGATGGCGTTGAACAGGTACTC 3388230 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAG 869448 | | | ||| ||| || || ||||||||||| Sbjct 3388231 CCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAG 3388266 Score = 120 bits (132), Expect = 4e-21 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 |||||||||||| | |||||| || ||||||||||| || |||||||||| |||||| Sbjct 3387694 GTACTCGCCCACCTTCTTCTCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTCCAT 3387753 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||||||||| || |||||| ||| | || | | | | |||| ||| Sbjct 3387754 GAAGTTGAACGGGTTCTTGGTGTTGTAGATCTTGCCAACGCCCAACTCCACCAGCAAGCG 3387813 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 || || |||||||| ||||||||| |||| ||| | ||||||||||||||| ||| Sbjct 3387814 ATCCGCCACAAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCCGATGAGGTTCAC 3387873 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 ||||| | || | | ||||| | ||| || || || ||| |||||||| Sbjct 3387874 AGGCAGGGCGTCTGTGAGGAACTCCTGCTCAATGAGCACCGCATCGCGGATGATCT 3387929 >seq5214 Length=3698012 Score = 125 bits (138), Expect = 9e-23 Identities = 265/392 (68%), Gaps = 15/392 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| || ||||| || ||| | ||| ||||| | ||||||||| || ||||| ||||| Sbjct 3421598 CTGATCCACGTAACGTGCCACATTGTTGAAGACCCTGAGCATGGGTACCAGGCCATTGGA 3421657 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||| || ||||| | | ||| ||| ||| || | || | | || Sbjct 3421658 GGTGCCATTCGTGCCGCAGATGGAGGTGCCCTTGGCCCGGATGCAATGGACATTCAGTCC 3421717 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| || ||||| || ||||| | |||||||||| | || | | |||||||||| Sbjct 3421718 AATGCCTCCTGCCGATTTCGAGATCATGGCGCACTGTTCCACCGACTTGAAGATGCCCTC 3421777 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||||||||||||| ||||| || || ||||||||||| |||||| | ||| | Sbjct 3421778 GATCGAGTCGGCCGTCATGGTCAGCAGGAAGCACGACGACAGTTGCGGCCGATTTGTGGC 3421837 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||| || ||||| |||| || |||||| ||| || ||||| || |||||| Sbjct 3421838 TGCGGCAAAAAGCGTTGGCGAGGCGTGGGTGAAGAACCGCTCCGACAGCAGGTTGTAGGT 3421897 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | |||| || ||||||| | ||| | |||| | ||||| || || Sbjct 3421898 CTC---CACG-GC-----CGCATCG---ATGTCCTC---TCCATGGATTCCGATCGCCAC 3421942 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGA 1630456 |||||| ||||||| ||| || |||||| ||| Sbjct 3421943 GCGCATCAGCATGTGCTGCGGACGCTCGGCGA 3421974 Score = 123 bits (136), Expect = 3e-22 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 1628383 TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG 1628442 |||||||||||||| | | |||||| | ||||||||||| || || | | || Sbjct 3421380 TCGTGCAGGCCGGGGCATTTGTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACG 3421439 Query 1628443 CGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCC 1628502 || ||| || || || |||| || ||||| ||||| ||||| || || |||||| Sbjct 3421440 CGTTTCATGAAAAGATCGGGTATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCC 3421499 Query 1628503 TCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCC 1628562 ||||||||| |||||| ||||| || || | |||| | ||| | |||||| |||||| Sbjct 3421500 TCCTTGCCGGTGTTCTTCTTGAGTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCC 3421559 Query 1628563 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||| ||| ||||| || ||||||||||| || Sbjct 3421560 AGGTAAATGGCGAAGGCACCGGGCCGCTTGCCGCCACC 3421597 >seq5283 Length=3589426 Score = 123 bits (136), Expect = 3e-22 Identities = 334/500 (67%), Gaps = 12/500 (2%) Strand=Plus/Plus Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222 |||| || ||||||||||| || || || ||||||||||| || | ||||| || | Sbjct 2850952 AAGGTGAAGATCTTGCGCTGATCCACGCCACCGAACTGGGCGTCCACCTTGAGGTACTCC 2851011 Query 1852223 TCGTCGAGGGCCTGCATGAGCGGG-TAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCAT 1852281 || || || ||||||| | |||| || |||| | || || |||| || Sbjct 2851012 TCATCCAGAGCCTGCA-GTCCGGGATAAAGCAACCCGGAGAGCAGTGGGTACTCCACCTG 2851070 Query 1852282 CTTGACCACCTGAGCGGCGGCCTT--TTGCGCCGTGCCG-GTGCGCACGTGCGCCGCGAG 1852338 ||||||||||| || ||||||| ||||| | || | || |||| | || || Sbjct 2851071 CTTGACCACCTCGGCTCCGGCCTTCTTTGCGTCATGTTGCGTCACCACG-GAGCTT--AG 2851127 Query 1852339 TCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CACTGG-TACTCGGTGCCGCGCACAAAC 1852396 | ||||| || || | ||| | || | || | | || ||| |||| |||||| Sbjct 2851128 TTTGTAGACATCCAGGGTGTA--CTCCTTGGACAGTTGATAGTCGCTGCCCTTGACAAAC 2851185 Query 1852397 TCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTAC 1852456 | | ||||||| ||||| ||| ||||||||||||||| | |||||| Sbjct 2851186 TTTAACTTCTCCAGCGGAACGCCAATGGAACTGAGCATGGCCTTGATCACCTGCTCGTAG 2851245 Query 1852457 CAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGC 1852516 | || || | || | ||| |||||||| ||| |||||| || | ||| ||| Sbjct 2851246 TATTGGGTGCGCAGCTCCAGCAGAGACCACGGCGCCTTCATGTTGTCCAGATAGGCATGC 2851305 Query 1852517 ACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAG 1852576 | |||||| || |||||| | ||| || || |||| || || || || | || | Sbjct 2851306 AGGTCGGCGAACAGGATCGTCACCTCGCATCCTGCCTTCAGGAAATCCGCAATCTTTGAC 2851365 Query 1852577 ATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGATC 1852636 |||||||| |||||| | | || || |||||||||| ||| || ||||| ||||| || Sbjct 2851366 ATGGGCACGAAGTAGGCGACATGTGGCTTGCCCGTCGTCGCTGTTCCCCAGTATATCTTC 2851425 Query 1852637 AGGGGGCGCTCGGCCATGAT 1852656 || ||||| |||| ||| Sbjct 2851426 AGATCCCGCTCCGCCAGGAT 2851445 >seq5221 Length=5268673 Score = 100 bits (110), Expect = 3e-15 Identities = 193/281 (69%), Gaps = 14/281 (5%) Strand=Plus/Plus Query 507598 GGTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATG---AACCGGCAGCCGTCGCT 507654 ||| ||||| || |||||| ||||| ||||||| ||||| |||||| |||| Sbjct 253164 GGTGGAGCGGCATTTGCGCGA---CGACGATCTGGTGATCTTCAACCGACAGCCGACGCT 253220 Query 507655 GCACATGGGCTCCATGCTCATGCACAAGGTGGTGCCCATGCCCGGGCGCACCATGCGATT 507714 |||| | ||| | ||||| |||| | ||||| || || | || | Sbjct 253221 CCACAAGATGAGTATGATGGGGCACAGGGTGAAGGTGTTGCCCTGGTCGACGTTCCGCAT 253280 Query 507715 CAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCA 507774 ||||| || ||| ||||||| ||||| || ||||||||||||||||| ||||| Sbjct 253281 GAACCTCTCCTGCACATCGCCCTACAATGCCGATTTCGACGGCGACGAGATGAATCTGCA 253340 Query 507775 CGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACA-CCATGAGCGTGTCGCTCA 507833 |||||| |||||| | | |||||||||||||| | ||| ||| | | ||| || Sbjct 253341 CGTGCCGCAGTCCATGGAGACGCGCGCCGAGGTGGAGAACATCCA----CATCACGCCCA 253396 Query 507834 ---AGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGC 507871 ||| | | |||||||||| ||||| ||| |||| ||| Sbjct 253397 GGCAGATCATCACGCCGCAGGCGAACAAACCCGTCATGGGC 253437 >seq4674 Length=694708 Score = 93.3 bits (102), Expect = 5e-13 Identities = 178/259 (69%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 1572380 CCGGTCGAGCCAAAGCC-GCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTC 1572438 ||||| ||||| || || ||| | |||||| |||||||| ||||| ||| || ||| Sbjct 523753 CCGGTGGAGCCGAATCCTGCCTC-GCCGCGTTCGGTGTCCTCCAGTTTGTCCACGAGCTC 523811 Query 1572439 GGGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGAC 1572498 | || || | | || ||| | |||||||||||||| | ||| || || Sbjct 523812 CAGTTCCGGATAGAAGATGCGCTCGCAAATGAACTGGGCGATGCGATCGCCGCGCTTCAC 523871 Query 1572499 AACGTGGTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGC 1572558 || ||| |||| | ||| ||||||||||||||||| | | |||||| || || | Sbjct 523872 CTCGAAGTCCACGTCCGAGTGATTGAAGAGCACGACGCCGAGGTTGCCGCGGTAATCCTC 523931 Query 1572559 ATCGATGACGCCTGCGCCGACGTCGAT---GCCCCTGACGGCCAGGGACGAGCGCGGCGC 1572615 || | ||||| ||||| || ||||| | | | |||||||| ||||| || || Sbjct 523932 GTCCACCACGCCGGCGCCCACATCGATGAAGTTCTTCACGGCCAGTCCAGAGCGTGGAGC 523991 Query 1572616 CACGCGCCCATAGTAGCCC 1572634 ||||| || ||| ||||| Sbjct 523992 AACGCGGCCGTAGGAGCCC 524010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106693670835993