Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5305 138 9e-28 seq5277 95.1 1e-14 seq4488 86.0 5e-12 >seq5305 Length=688299 Score = 138 bits (152), Expect = 9e-28 Identities = 151/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 34447 GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGC 34506 || || ||||| |||||||| || |||||||| ||||| || | ||||| || || | Sbjct 42288 GTCTGGGCGCCTAGCTCGCATCCAAAGTACTTGGTCGGATAGGTAGCCGGTCGACCTATG 42229 Query 34507 GCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCG 34566 ||| || | ||| | |||||| |||| || |||||||||||||||||||| ||||| Sbjct 42228 GCCCGAGCCACTTCAGCCATGTTAACGAGAACGGTCTTGATGCCGTTGCCCTTGCCTTCT 42169 Query 34567 ACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGT 34624 ||||| || ||||| || ||||| || ||||| ||||| ||||| |||| |||| | Sbjct 42168 ACCTTTGCCTGCAGA--CGTGGCATCTTATAGCGATAGAAGATGTCCGTCACACTGCGAT 42111 Query 34625 TAACGTTCACAGTCCCCAT 34643 | ||||| || || |||| Sbjct 42110 TGACGTTTACGGTGGCCAT 42092 >seq5277 Length=7425378 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || ||||| || || || || ||||| |||||||| | || |||||| Sbjct 1192781 AAAATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACTTTGGAGGTCGAGCCT 1192840 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| | | | || || |||||| ||||| || ||| | ||| ||| Sbjct 1192841 TCCGATACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGAT 1192900 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || |||| || | ||| || || ||||| || |||| | | || | | |||||| Sbjct 1192901 CAGCAGCGACTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGTACTCTTTCCGATTAC 1192960 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||| |||||||| || | ||| |||| Sbjct 1192961 AACATTCAGAAAGAATCCACCCTTCACTTGGT 1192992 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| |||||| | ||| ||||| || | || |||| ||| ||||| || |||||| Sbjct 1193105 GACAAGGAAGGCATCCCCCCAGATCAGCAGCGTCTCATTTTTGCTGGTAAGCAACTGGAG 1193164 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||| | | || || ||||||||||||| || || || || || |||||| ||||||| Sbjct 1193165 GATGGCCGTACGTTGTCGGATTACAACATCCAGAAGGAGTCGACTTTGCACTTGGTGTT 1193223 >seq4488 Length=533506 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| | |||||||| ||||| ||| | || ||||||| | Sbjct 135305 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCC 135364 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || |||||| ||||| || ||| | ||| ||||| Sbjct 135365 GACACCATCGAGAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCAG 135424 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||||||||||| | || || |||| |||||| Sbjct 135425 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAAC 135484 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || | || ||||| | | ||||| || || Sbjct 135485 ATCCAGAAGGAGTCGACCCTCCATCTGGTGCTCCGCCTGCGCGGTGG 135531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412814283948497