Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq5078 138 6e-28 >seq5078 Length=1488007 Score = 138 bits (152), Expect = 6e-28 Identities = 433/663 (65%), Gaps = 11/663 (2%) Strand=Plus/Minus Query 67598 GCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCT 67657 || || || || || |||| || | ||||| || ||||| || ||||| || || Sbjct 1314324 GCGCTGGGTATTGGTGGGTTGCCCCGTGGCCGTGTGGTGGAAATTTACGGGCCAGAAAGC 1314265 Query 67658 TCAGGGAAGTCAACGTTGTGC-CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAA 67716 || || || | ||| | ||| || || || | || | || || ||| ||||||| Sbjct 1314264 TCTGGTAAAACCACGCT-TGCGCTGCATGCCATTGCAGAAGCACAAAAGCGTGGTGGCAC 1314206 Query 67717 CGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGT 67776 || | || || ||||| ||| | | || || | || ||| ||| || || Sbjct 1314205 TTGTGCTTTTATTGATGCCGAGCATGCGTTGGATCCCGGTTATGCCAAAAAGCTGGGCGT 1314146 Query 67777 GGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGT 67836 |||||| || || || || | |||||||| | || || ||||| |||| || | Sbjct 1314145 GGATGTAGATAACCTGCTGATCAGCCAGCCAGATGCGGGTGAACAGGCGTTGGAAATTGC 1314086 Query 67837 TGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCT 67896 || ||||| || |||| || | | | || || || ||| || || || Sbjct 1314085 AGATACACTCGTGCGATCCGGCGCTATTGACGTTTTGGTGGTAGATAGTGTTGCAGCACT 1314026 Query 67897 GGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCG 67956 ||||||||| || || || ||||| ||||| || || || || ||||| ||||| || Sbjct 1314025 GGTGCCGCGCGCAGAACTGGAAGGAGACATGGGCGATAGCCATGTTGGCCTTCATGCGCG 1313966 Query 67957 CCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAACACGCTCAC 68016 ||||| ||||| |||| ||||| || || ||| | || || |||| || || | Sbjct 1313965 TTTGATGAGCCAGGCTTTGCGTAAGCTTACGGGTACGGTGGCACGCTCCAATACTCTGAT 1313906 Query 68017 CCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCA--ACGTGGGCTACGGCCCGAATGAG 68074 | | |||| ||| | ||| ||| || || | || | || ||| || Sbjct 1313905 GATTTTCCTGAACCAGATCCGCCTGAAAATTGGTGTGATGTTTGGTAAT--CCG---GAA 1313851 Query 68075 ACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGG 68134 || ||||| |||||||| || ||| ||||| | || |||||||||||| | ||| | Sbjct 1313850 ACAACCACGGGTGGTAATGCCCTGAAGTTCTATTCTTCCGTGCGTATGGATATTCGCCGC 1313791 Query 68135 ATCGCCACCGAGAAGGAAGGCGATGAGGCTGTC-GGCAACCGCACGCGCGTGAAGGTTGT 68193 |||| | ||||| ||||||| || | || || | |||||||| |||||||| Sbjct 1313790 ATCGGGTCTATCAAGGACAAGGATGAGG-TGACAGGTAATCAGACGCGCGTAAAGGTTGT 1313732 Query 68194 CAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGG 68253 || |||||| ||||||| || ||| |||| || ||| ||| | |||||||| || Sbjct 1313731 TAAAAACAAGATGGCGCCACCTTTCCGTCAGGTAGAATTTGATATCATGTACGGCGAAGG 1313672 Query 68254 CAT 68256 ||| Sbjct 1313671 CAT 1313669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247433227265232