Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq4427 143 4e-29 seq5078 136 7e-27 >seq4427 Length=76274 Score = 143 bits (158), Expect = 4e-29 Identities = 252/362 (70%), Gaps = 10/362 (3%) Strand=Plus/Plus Query 35547 CCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACA 35606 ||||| || || || | ||||| |||| ||| |||||||||| ||| | || || Sbjct 33373 CCTTCATTGGCATAAATGCGCGCAGGCAACGGGGTGGTGTTGCTGATCTCGATTGTTACC 33432 Query 35607 TGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAG 35666 || |||||||| || ||||||||||| || ||||| || || ||||| ||||| || ||| Sbjct 33433 TGGCCTTCCCATTCGGGTTCCAGCGGTGTGACGTTCACAATAATACCGCAGCGGGCATAG 33492 Query 35667 GTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTG 35726 ||| || || | |||||||| || || | ||||| |||||||| ||||| | ||| Sbjct 33493 GTGGATTTGCCAAGGCACACCACCAGCACATCCCGCGGGATGCGGAAATATTCAATGGTG 33552 Query 35727 CGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGCTGTCA---GCCTTAACCGGCTGC 35783 | ||||| | |||||||| |||||||| ||||| ||| ||||| | || | Sbjct 33553 TGGGCCAGCACAAAGCTGTTGGGCGGAAT---GATGCATTCATCTGCCTT-GCGGGACAC 33608 Query 35784 AGGCACTT--GGGATCGAAGTTCTTCGGATCAACCACTGCGCTGTTGATGTTGGTGAAGA 35841 | ||| ||| | ||||||||| || || || | ||| |||| | | ||||| | Sbjct 33609 AAATCCTTCAGGGCT-GAAGTTCTTGGGGTCCACAATGGCGTTGTTCACATCCGTGAAAA 33667 Query 35842 CTTCCCACTCATCGGCAGCACGCACGTCATAACCATACGACGAGTTGCCGTACGAGATAA 35901 | ||||| || | ||| | ||||| || || || || ||||| ||||| | Sbjct 33668 TACGGAAATCATCCGCCACGCGCGCATCATACCCGTAGGAGGACAGACCGTAGGAGATCA 33727 Query 35902 CG 35903 || Sbjct 33728 CG 33729 >seq5078 Length=1488007 Score = 136 bits (150), Expect = 7e-27 Identities = 207/292 (71%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCA-GTCCTCGTCACTCT 35523 ||||||| || |||||| | ||||| ||| | |||||| | || |||| || Sbjct 927851 CTGGCCCATATACTTACCGGCCCGATCTGCGTAGCTTACTTCGCACGGGCTT-TCACCCT 927793 Query 35524 CGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAG 35583 || ||||| | ||| | ||||| || || || | || || |||| || | Sbjct 927792 TAAAGAACAGAAACTGGCAAATGCCTTCATTGGCATAAATGCGTGCAGGCAACGGCGTGG 927733 Query 35584 TGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGA 35643 ||||||||| ||| | || || || |||||||| || ||||| | || || ||||||| Sbjct 927732 TGTTGCTGATCTCGATCGTTACCTGTCCTTCCCATTCTGGTTCTAAAGGGGTGACGTTGA 927673 Query 35644 CGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCG 35703 |||| || || |||||||| |||||| |||||||| || || || || || | |||| Sbjct 927672 CGATAATGCCGCAGCGCGCATAGGTGGATTTACCCAAGCATACTACCAGTACATCACGCG 927613 Query 35704 GAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAAT 35755 | || ||||||||||| | ||| | ||||| | |||||||| |||||||| Sbjct 927612 GGATACGGAAGTATTCAATCGTATGGGCCAGCACAAAGCTGTTGGGCGGAAT 927561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825860751221160