Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_022096.1
Length=258139
Score E
Sequences producing significant alignments: (Bits) Value
seq4427 143 4e-29
seq5078 136 7e-27
>seq4427
Length=76274
Score = 143 bits (158), Expect = 4e-29
Identities = 252/362 (70%), Gaps = 10/362 (3%)
Strand=Plus/Plus
Query 35547 CCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACA 35606
||||| || || || | ||||| |||| ||| |||||||||| ||| | || ||
Sbjct 33373 CCTTCATTGGCATAAATGCGCGCAGGCAACGGGGTGGTGTTGCTGATCTCGATTGTTACC 33432
Query 35607 TGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAG 35666
|| |||||||| || ||||||||||| || ||||| || || ||||| ||||| || |||
Sbjct 33433 TGGCCTTCCCATTCGGGTTCCAGCGGTGTGACGTTCACAATAATACCGCAGCGGGCATAG 33492
Query 35667 GTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTG 35726
||| || || | |||||||| || || | ||||| |||||||| ||||| | |||
Sbjct 33493 GTGGATTTGCCAAGGCACACCACCAGCACATCCCGCGGGATGCGGAAATATTCAATGGTG 33552
Query 35727 CGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGCTGTCA---GCCTTAACCGGCTGC 35783
| ||||| | |||||||| |||||||| ||||| ||| ||||| | || |
Sbjct 33553 TGGGCCAGCACAAAGCTGTTGGGCGGAAT---GATGCATTCATCTGCCTT-GCGGGACAC 33608
Query 35784 AGGCACTT--GGGATCGAAGTTCTTCGGATCAACCACTGCGCTGTTGATGTTGGTGAAGA 35841
| ||| ||| | ||||||||| || || || | ||| |||| | | ||||| |
Sbjct 33609 AAATCCTTCAGGGCT-GAAGTTCTTGGGGTCCACAATGGCGTTGTTCACATCCGTGAAAA 33667
Query 35842 CTTCCCACTCATCGGCAGCACGCACGTCATAACCATACGACGAGTTGCCGTACGAGATAA 35901
| ||||| || | ||| | ||||| || || || || ||||| ||||| |
Sbjct 33668 TACGGAAATCATCCGCCACGCGCGCATCATACCCGTAGGAGGACAGACCGTAGGAGATCA 33727
Query 35902 CG 35903
||
Sbjct 33728 CG 33729
>seq5078
Length=1488007
Score = 136 bits (150), Expect = 7e-27
Identities = 207/292 (71%), Gaps = 2/292 (1%)
Strand=Plus/Minus
Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCA-GTCCTCGTCACTCT 35523
||||||| || |||||| | ||||| ||| | |||||| | || |||| ||
Sbjct 927851 CTGGCCCATATACTTACCGGCCCGATCTGCGTAGCTTACTTCGCACGGGCTT-TCACCCT 927793
Query 35524 CGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAG 35583
|| ||||| | ||| | ||||| || || || | || || |||| || |
Sbjct 927792 TAAAGAACAGAAACTGGCAAATGCCTTCATTGGCATAAATGCGTGCAGGCAACGGCGTGG 927733
Query 35584 TGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGA 35643
||||||||| ||| | || || || |||||||| || ||||| | || || |||||||
Sbjct 927732 TGTTGCTGATCTCGATCGTTACCTGTCCTTCCCATTCTGGTTCTAAAGGGGTGACGTTGA 927673
Query 35644 CGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCG 35703
|||| || || |||||||| |||||| |||||||| || || || || || | ||||
Sbjct 927672 CGATAATGCCGCAGCGCGCATAGGTGGATTTACCCAAGCATACTACCAGTACATCACGCG 927613
Query 35704 GAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAAT 35755
| || ||||||||||| | ||| | ||||| | |||||||| ||||||||
Sbjct 927612 GGATACGGAAGTATTCAATCGTATGGGCCAGCACAAAGCTGTTGGGCGGAAT 927561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 825860751221160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |