Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5242 158 2e-32 seq5283 145 1e-28 seq5277 131 3e-24 seq5039 129 9e-24 seq5214 127 3e-23 seq5221 98.7 2e-14 >seq5242 Length=5320397 Score = 158 bits (174), Expect = 2e-32 Identities = 233/329 (71%), Gaps = 7/329 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||||| |||||| ||| || || ||||| || ||||||||| Sbjct 3388001 CCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGACCGCGCTTC 3388060 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || |||| ||| ||||| ||| ||||||||||| ||||||||||| Sbjct 3388061 TTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGCAAAT 3388120 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGA--TCCACTTCATCGCCC 794518 ||| || ||||| | ||| || ||| ||| | || |||| || |||| Sbjct 3388121 GCGATGATGCGCTCCCCGAAATTG-----GCCGACTTGGAGGAGATCCAGGACAGAGCCC 3388175 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | || ||||| | |||||| |||| ||| ||||||||| || |||| ||| || Sbjct 3388176 AGTCAGCCTTGCGCTTCACCGCCGGCATCGTCTCGATGGCGTTGAACAGGTACTCCCGCT 3388235 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | ||| ||| || ||| |||||||| || | ||| |||| ||||| | ||| | Sbjct 3388236 GGTGCGGATCCCGGATGTAAGTGTCGATCAGCACGCTGTACATCTCCGAGTGCACGTTCT 3388295 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | ||||||||||||||||| || |||||| Sbjct 3388296 CCATGGCGATCTGGAAGCCGTAGAAGCAG 3388324 Score = 129 bits (142), Expect = 9e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||||||||| ||||| || ||||||| | ||| | |||| ||||| | Sbjct 3559367 GAGAAGCGCACCGATGACATATCCTCGTGGGATGCCGACTTCCTCAAGGTGGACCAGGGC 3559308 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 ||||| || ||| ||||||| |||||||| |||||| ||||| || || || || | Sbjct 3559307 ACCCTGTTCGAGCTGATCCTGGCCGCCAATTACCTCAACATCCAGGGTCTGCTGGACGTC 3559248 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 ||||| || ||||||||| | ||||||||||||||||| ||||||||||| | || Sbjct 3559247 ACCTGCAAAACGGTGGCCAACATGATCAAGGGCAAGTCGCCGCAGGACATCCGCGACACT 3559188 Query 2035746 TTTAACATCAA 2035756 || |||||| Sbjct 3559187 TTCGCCATCAA 3559177 Score = 109 bits (120), Expect = 9e-18 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||||||||| | |||||| || ||||||||||| || |||||||||| |||||| Sbjct 3387695 TACTCGCCCACCTTCTTCTCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTCCATG 3387754 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 | ||||||||| || |||| ||| | || | | | | |||| ||| Sbjct 3387755 AAGTTGAACGGGTTCTTGGTGTTGTAGATCTTGCCAACGCCCAACTCCACCAGCAAGCGA 3387814 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087 || || || || |||||||||||| |||| ||| | ||||||||||||||| ||| Sbjct 3387815 TCCGCCACAAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCCGATGAGGTTCACA 3387874 Query 794088 GGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||||| | || ||| ||||| | ||| || || || ||| |||||||| Sbjct 3387875 GGCAGGGCGTCTGTGAGGAACTCCTGCTCAATGAGCACCGCATCGCGGATGATCT 3387929 Score = 105 bits (116), Expect = 1e-16 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | |||||| | | || ||||||| |||| || | ||||||||||| Sbjct 3388319 AAGCAGCGGGCCTCCGTGATCTGCACCTCCTGGCTGAACCGCTCCACCAGGTTCTCATTG 3388378 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 |||||||| ||| |||||| || ||||| || |||||| ||| ||||||||||||||| Sbjct 3388379 ACGATGCCATCGGAGGCGGCAAAGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCGTCG 3388438 Query 796261 TCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAA 796320 || |||| | ||||| | | ||| | || || |||||||| ||||||| Sbjct 3388439 TCCTTGAGGCGGTGCCAGTCGGTCAGGTCCTTGGACAGATCCACCTCCTCTACGGTCCAG 3388498 Query 796321 AAGGAGGCCTCGGCCT 796336 || |||||||| |||| Sbjct 3388499 AAAGAGGCCTCAGCCT 3388514 >seq5283 Length=3589426 Score = 145 bits (160), Expect = 1e-28 Identities = 363/544 (67%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 2411460 GTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTT 2411519 ||| |||||||| |||||||| | ||||| | | || |||| |||||||| Sbjct 2850906 GTGAATGCGCTTCTCGTAGCCCAACTGGGGCAGATACTTTTCCGAGAAGGTGAAGATCTT 2850965 Query 2411520 GCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTG 2411579 |||||| || || || ||||||||||| || | ||||| || ||| || || ||||| Sbjct 2850966 GCGCTGATCCACGCCACCGAACTGGGCGTCCACCTTGAGGTACTCCTCATCCAGAGCCTG 2851025 Query 2411580 CATGAGCGGG-TAGACGAGGTTGCTGAGCGGCGGGTTGCGGTCCATCTTGACCACCTGGG 2411638 || | |||| || | | | |||| | |||| || ||||||||||| || Sbjct 2851026 CA-GTCCGGGATAAAGCAACCCGGAGAGCAGTGGGTACTCCACCTGCTTGACCACCTCGG 2851084 Query 2411639 CGGCGGCCTT--TTGCGCCGTGCCGACGGTCACGCGCGCCG-TCAGGCGCAAGAGGTCGA 2411695 | ||||||| ||||| | || | ||||| | || | | || ||| || | Sbjct 2851085 CTCCGGCCTTCTTTGCGTCATGTTGC--GTCAC-CACGGAGCTTAGTTTGTAGACATCCA 2851141 Query 2411696 GCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCG 2411755 | ||||| | | | || || |||||||| ||||| | | ||||||| Sbjct 2851142 GGGTGTACTCCTTGGACAGTTGATAGTCGCTGCCCTTGACAAACTTTAACTTCTCCAGCG 2851201 Query 2411756 GGACGCCAATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCT 2411815 | ||||||||| ||||||||||||||| | |||||| | || || ||| Sbjct 2851202 GAACGCCAATGGAACTGAGCATGGCCTTGATCACCTGCTCGTAGTATTGGGTGCGCAGCT 2851261 Query 2411816 CGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGA 2411875 | | || |||||||| ||| ||||| || | ||| |||| |||||| || |||| Sbjct 2851262 CCAGCAGAGACCACGGCGCCTTCATGTTGTCCAGATAGGCATGCAGGTCGGCGAACAGGA 2851321 Query 2411876 TCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGC 2411935 || ||||| ||||| |||| || || || || | || | |||||||| |||||| Sbjct 2851322 TCGTCACCTCGCATCCTGCCTTCAGGAAATCCGCAATCTTTGACATGGGCACGAAGTAGG 2851381 Query 2411936 CCAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATGCAGAGAGGGCGCTCGGCCA 2411995 | | ||| ||||||||||||| ||| || ||||| || || ||| ||||| |||| Sbjct 2851382 CGACATGTGGCTTGCCCGTCGTCGCTGTTCCCCAGTATATCTTCAGATCCCGCTCCGCCA 2851441 Query 2411996 TGAT 2411999 ||| Sbjct 2851442 GGAT 2851445 >seq5277 Length=7425378 Score = 131 bits (144), Expect = 3e-24 Identities = 238/346 (69%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 2019032 GGGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGG 2019091 ||| ||||| ||| |||||||||||| | ||| ||| |||||| | | ||| |||| Sbjct 4991044 GGGACCGCCAGGCGTGGGCAAGACCACCACGATCCAGTGTCTGGCGAGGATTCTCCTGGG 4990985 Query 2019092 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGT 2019151 | | | | ||||| |||||||| || ||||| || | ||||| || | || || Sbjct 4990984 AGACAGCTACAAAGAGGCTGTGCTCGAGCTGAATGCCTCCAATGAGCGAGGAATCGATGT 4990925 Query 2019152 CGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCT-GCCGCCCGGCCGCC 2019210 ||||| | | |||||| || | ||| | ||| | ||||| |||||| | Sbjct 4990924 GGTGCGCAACAAGATCAAGATGTTTGCCCAGCAAAAGGT-GACATTGCCGCGCGGCCGGC 4990866 Query 2019211 ACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCC 2019270 ||||| | | || || || ||||| ||| || | ||| || ||||||||||| || | Sbjct 4990865 ACAAGATCGTGATACTGGACGAGGCGGACAGCATGACGGAGGGTGCCCAGCAGGCGCTGC 4990806 Query 2019271 GATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGT 2019330 | |||||||| | |||| || ||| ||||| || || |||||||||||||| Sbjct 4990805 GCCGCACCATGGAGATCTACAGCAGCACCACGCGCTTCGCCCTGGCCTGCAACACCAGCG 4990746 Query 2019331 CGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTT 2019376 || | ||||||| || |||| || |||||||| ||||| || Sbjct 4990745 AGAAGATCATCGAGCCCATCCAATCGCGCTGCGCCATGTTGCGGTT 4990700 >seq5039 Length=2173386 Score = 129 bits (142), Expect = 9e-24 Identities = 146/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCG--AGGTCGACCAAC 2035623 || |||||||| || |||||| ||||||| | | ||| | |||||||||| Sbjct 994202 GAGAAGCGCACGGATGACATTATCTCGTGGGAT--GCCGATTTCCTGAAGGTCGACCAGG 994145 Query 2035624 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATT 2035683 ||| || || ||| | || || || |||||||| || ||||||||| ||| || || Sbjct 994144 GCACTCTGTTCGAGCTCATACTGGCTGCCAACTATCTGGACATCAAGGGCCTGCTGGAGC 994085 Query 2035684 TGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGA 2035743 | |||||||| ||||||||| | |||||||||||| | || ||||| |||||||||| Sbjct 994084 TTACCTGCAAGACGGTGGCCAACATGATCAAGGGCAAGACTCCGGAGGAGATCCGCAAGA 994025 Query 2035744 CCTTTAACATCAAG 2035757 |||| ||||||||| Sbjct 994024 CCTTCAACATCAAG 994011 >seq5214 Length=3698012 Score = 127 bits (140), Expect = 3e-23 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 2071795 TCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACG 2071854 |||||||||||||| | | ||| || | ||||||||||| ||| | | | ||| Sbjct 3421380 TCGTGCAGGCCGGGGCATTTGTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACG 3421439 Query 2071855 CGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCC 2071914 || ||| || || ||| |||| ||| |||| ||||||||||| || || |||||| Sbjct 3421440 CGTTTCATGAAAAGATCGGGTATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCC 3421499 Query 2071915 TCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCC 2071974 ||||||||| |||||| || || || || | |||| | ||| | |||||| |||||| Sbjct 3421500 TCCTTGCCGGTGTTCTTCTTGAGTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCC 3421559 Query 2071975 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||| ||| ||||| || ||||||||||| || Sbjct 3421560 AGGTAAATGGCGAAGGCACCGGGCCGCTTGCCGCCACC 3421597 Score = 111 bits (122), Expect = 2e-18 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| || || || || ||| | ||| ||||| | ||||||||| || ||||| ||||| Sbjct 3421598 CTGATCCACGTAACGTGCCACATTGTTGAAGACCCTGAGCATGGGTACCAGGCCATTGGA 3421657 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||| || ||||| | | ||| |||| ||| || | || | | || Sbjct 3421658 GGTGCCATTCGTGCCGCAGATGGAGGTGCCCTTGGCCCGGATGCAATGGACATTCAGTCC 3421717 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| || |||| || ||||| | ||||||| || || || || | |||||||||| Sbjct 3421718 AATGCCTCCTGCCGATTTCGAGATCATGGCGCACTGTTCCACCGACTTGAAGATGCCCTC 3421777 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCG 2073770 ||||||||||||| ||||| || ||| ||||||||||| |||||| || Sbjct 3421778 GATCGAGTCGGCCGTCATGGTCAGCAGGAAGCACGACGACAGTTGCGGCCG 3421828 >seq5221 Length=5268673 Score = 98.7 bits (108), Expect = 2e-14 Identities = 200/292 (68%), Gaps = 14/292 (5%) Strand=Plus/Plus Query 429528 GTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCGTCGCTCCAC 429587 || ||||| || ||||| || ||| | ||| || | ||||| |||||| |||||||| Sbjct 253165 GTGGAGCGGCATTTGCGCGACGACGATCTGGTGATCTTCAACCGACAGCCGACGCTCCAC 253224 Query 429588 ATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCC-GGTCGCACCTTCCGGCTCAA 429646 | | | ||| | |||| |||| | ||||| ||||| || ||||| | || Sbjct 253225 AAGATGAGTATGATGGGGCACAGGGTGAAGGTGTTGCCCTGGTCG-ACGTTCCGCATGAA 253283 Query 429647 CCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGT 429706 ||| || || ||||||| ||||| || ||||||||||||||||| |||||||| Sbjct 253284 CCTCTCCTGCACATCGCCCTACAATGCCGATTTCGACGGCGACGAGATGAATCTGCACGT 253343 Query 429707 GCCCCAGTC---GGAGATGGCACGCGCCGAAGTCGCCCACACCATGGGCGTGGCCCTCA- 429762 ||| ||||| ||||| | |||||||| || | | | ||| | | | | || Sbjct 253344 GCCGCAGTCCATGGAGA---CGCGCGCCGAGGTGG---AGAACATCCACATCACGCCCAG 253397 Query 429763 --AGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTGATGGAC 429812 || | | |||||||||| ||||| ||| |||| || ||||| |||| Sbjct 253398 GCAGATCATCACGCCGCAGGCGAACAAACCCGTCATGGGCATCGTGCAGGAC 253449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915668892508331