Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5214 136 3e-27 seq4488 134 9e-27 seq5277 125 5e-24 seq4172 123 2e-23 >seq5214 Length=3698012 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||| ||||||||||||||||||||| || ||| |||| |||| Sbjct 3523180 CAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATC 3523121 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || ||||||||||| || ||||| ||| | || | || || ||||| Sbjct 3523120 TTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC 3523061 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||| || | | || | || | ||||| |||| || ||||| Sbjct 3523060 CTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGT 3523001 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| |||||||||||||| || ||||||||||| Sbjct 3523000 CTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 3522968 >seq4488 Length=533506 Score = 134 bits (148), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| || | ||| ||||||||| ||||| |||||||| ||| |||| |||| Sbjct 135516 AGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCC 135457 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| |||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 135456 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 135397 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || | ||| || || | ||| |||| Sbjct 135396 TGAATCTTAGCCTTCAC--ATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTGATGG 135339 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || |||||||| || ||||||||||||||| Sbjct 135338 TCTTGCCGGTGAGGGTTTTCACAAAGATCTGCATG 135304 >seq5277 Length=7425378 Score = 125 bits (138), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 1193907 AGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCC 1193848 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| || || || || || || ||||| ||| | || | ||||||||||| Sbjct 1193847 TCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 1193788 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| || || || || || | ||| || ||| || |||| ||| |||| Sbjct 1193787 TGAATTTTGGCCTTTAC--ATTCTCAATGGTATCAGAGGGCTCAACTTCAAGGGTGATGG 1193730 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || | |||||| || |||||||||||| Sbjct 1193729 TCTTGCCAGTTAAGGTCTTCACGAAGATCTGCATG 1193695 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||| || ||||||||||| || || || || | || |||| Sbjct 1192995 AGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCT 1192936 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||||||||| ||||| ||| | || | ||||||||||| Sbjct 1192935 TCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 1192876 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || |||| || | |||||| || | || |||| Sbjct 1192875 TGAATCTTGGCCTTCAC--ATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGG 1192818 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || | |||||| |||||||||||||| Sbjct 1192817 TCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1192784 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 1193451 AGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCT 1193392 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || ||||| |||||||| || || ||||| ||| | || | ||||||||||| Sbjct 1193391 TCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCC 1193332 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || ||| | || | ||| | || || || | || ||||| Sbjct 1193331 TGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTT 1193272 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || ||||||||||| ||||| |||||| Sbjct 1193271 TTACCGGTAAGGGTCTTTACGAAGATTTGCATG 1193239 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||| | ||| ||| ||||| ||||| |||||||| | | | || |||| ||| Sbjct 1194132 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCCTCC 1194073 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||| || ||||| || || || ||||| ||| | || | ||||| ||||| | Sbjct 1194072 AGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCTTTGTCCTGG 1194013 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || || ||| | || | ||| || ||| || || | |||||||| || Sbjct 1194012 ATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAACCTCCAGAGTTATGGTTTTA 1193953 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || |||||||| || ||||| |||||| Sbjct 1193952 CCGGTCAGGGTCTTCACGAAGATTTGCATG 1193923 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| |||||||| ||||| || || || || |||| | || Sbjct 1194363 AGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCC 1194304 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| ||||| ||||||| || ||||||||| | || | ||||||||||| Sbjct 1194303 TCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 1194244 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| || || || || || | ||| | ||| || || | || |||| Sbjct 1194243 TGGATTTTAGCCTTCAC--ATTCTCAATGGTGTCAGATGGCTCCACCTCCAGTGTAATGG 1194186 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || || |||||||| || ||||| |||||| Sbjct 1194185 TCTTGCCAGTTAGGGTCTTCACGAAGATTTGCATG 1194151 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||| || ||||| ||||| |||||| | || |||| Sbjct 1193679 AGGACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCC 1193620 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| || |||| ||| ||||| ||| | || | ||||||||||| Sbjct 1193619 TCAAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 1193560 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | ||| | || || || | || |||| Sbjct 1193559 TGAATCTTGGCCTTCAC--ATTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGG 1193502 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||| || | |||||| || ||||| ||||| Sbjct 1193501 TTTTTCCGGTTAAGGTCTTCACGAAGATTTGCAT 1193468 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| || ||||| | | || |||| ||||||||||| || || || Sbjct 1193203 CTCCTTCTGGATGTTGTAATCCGACAACGTACGGCCATCCTCCAGTTGCTTACCAGCAAA 1193144 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || || ||||| ||| | || | || |||||||| | || || || ||| Sbjct 1193143 AATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 1193084 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| | || || || | || |||||||| ||||| |||||||| || Sbjct 1193083 CTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTCTTGCCCGTCAGGGTCTTCAC 1193024 Query 34966 AAAGATCTGCATG 34978 |||||||||||| Sbjct 1193023 GAAGATCTGCATG 1193011 >seq4172 Length=1033301 Score = 123 bits (136), Expect = 2e-23 Identities = 158/216 (73%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||| || | ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 906754 CAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATC 906813 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||||||||||||||||| || ||||| ||| | || | || |||||||| Sbjct 906814 CTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTGTC 906873 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || || | || | |||||| || | || ||| Sbjct 906874 CTGGATCTTGGCCTTCAC--ATTCTCGATGGTATCGGAAGGCTCGACCTCCAAAGTGATG 906931 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || ||||| ||||| ||||||||||||||| Sbjct 906932 GTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCATG 906967 Score = 104 bits (114), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| |||||||| || || | | | || |||| ||||| |||||||||||||| Sbjct 907231 CTCCTTCTGGATGTTATAATCGGACAAGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAA 907290 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||| ||| | || | ||||||||||| | || || || || | Sbjct 907291 GATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCAC--A 907348 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || | ||| || || | || |||||||| || || || ||||| Sbjct 907349 TTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTC 907408 Query 34964 ACAAAGATCTGCATG 34978 || |||||||||||| Sbjct 907409 ACGAAGATCTGCATG 907423 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| |||| || | ||| |||||| || ||||| ||||| || Sbjct 906968 CCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 907027 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| |||||||||||||| |||| || ||||| ||| | || Sbjct 907028 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGG 907087 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || ||| | || | || | ||| || Sbjct 907088 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACC 907147 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || |||||||| || || | ||||| || |||||||||||| Sbjct 907148 TCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCATG 907195 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | |||||||| ||||| ||| |||||||| |||||||| || || Sbjct 907424 CCTCCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGAC 907483 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | || | || ||||| |||||||||||||| |||| || ||||| ||| | || Sbjct 907484 AAAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 907543 Query 34871 ACCCCCTCCTTGTC 34884 | ||||||||||| Sbjct 907544 ATTCCCTCCTTGTC 907557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325671250230551