Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq5079 95.1 4e-15 seq4704 95.1 4e-15 seq4161 93.3 2e-14 >seq5079 Length=1084440 Score = 95.1 bits (104), Expect = 4e-15 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 50107 CTGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACC 50166 |||||||||| ||| ||||||||||| ||||||| |||| |||||||||| ||||||||| Sbjct 807010 CTGGTTGCGGGGGCAGGATTTGAACCTGCGGCCTTCAGGTTATGAGCCTGACGAGCTACC 806951 Query 50167 GAACTGCTCTACTCCGCATT 50186 | |||||| || |||| || Sbjct 806950 GGGCTGCTCCACCCCGCGTT 806931 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| ||| ||||||||||| ||||||| |||| |||||||||| |||||||||| Sbjct 1002552 TGGTTGCGGGGGCAGGATTTGAACCTGCGGCCTTCAGGTTATGAGCCTGACGAGCTACCG 1002493 Query 50168 AACTGCTCTACTCCGCATT 50186 |||||| || |||| || Sbjct 1002492 GGCTGCTCCACCCCGCGTT 1002474 >seq4704 Length=42152 Score = 95.1 bits (104), Expect = 4e-15 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 50107 CTGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACC 50166 |||||||||| ||| ||||||||||| ||||||| |||| |||||||||| ||||||||| Sbjct 40025 CTGGTTGCGGGGGCAGGATTTGAACCTGCGGCCTTCAGGTTATGAGCCTGACGAGCTACC 40084 Query 50167 GAACTGCTCTACTCCGCATT 50186 | |||||| || |||| || Sbjct 40085 GGGCTGCTCCACCCCGCGTT 40104 >seq4161 Length=32127 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| ||| ||||||||||| ||||||| |||| |||||||||| |||||||||| Sbjct 31789 TGGTTGCGGGGGCAGGATTTGAACCTGCGGCCTTCAGGTTATGAGCCTGACGAGCTACCG 31848 Query 50168 AACTGCTCTACTCCGCATT 50186 |||||| || |||| || Sbjct 31849 GGCTGCTCCACCCCGCGTT 31867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181591492155198