Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq5214 93.3 4e-14 seq5277 91.5 1e-13 seq4172 86.0 6e-12 >seq5214 Length=3698012 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 151277 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACT 151336 |||| |||||| || || || || || || ||| | ||||| |||||| |||| | || Sbjct 3421107 TTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCGGCGCGGAATACTCAACG 3421166 Query 151337 ATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGG 151396 ||||| | |||||||||||||| || || || ||| || ||||| || | | Sbjct 3421167 ATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCTG 3421226 Query 151397 TTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTC 151437 ||||| | |||||| | | ||||||||| |||||||||| Sbjct 3421227 TTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTC 3421267 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| || || || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 3523122 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 3523063 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || ||| || ||| | | ||| | || || | ||||| || |||| ||| | Sbjct 3523062 TCCTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATG 3523003 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||||| || | || || ||||| || ||||| Sbjct 3523002 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 3522968 Score = 86.0 bits (94), Expect = 6e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 150403 TGTGCGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGA 150462 |||||| | ||||||||||||||| |||||||| ||||| ||| | ||| | || Sbjct 3420239 TGTGCGCAGATAGTACATGCCGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGA 3420298 Query 150463 CGCCATTTTAGGCAAAG-TAGGGTTTGCCATGTACACGTTGAACGATTGACTTTGATCGA 150521 || || ||| | | || | || | ||||| | | ||||||||| |||||||| |||| Sbjct 3420299 CGTCAGTTT-GCCGTAGTTCGGCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGA 3420357 Query 150522 TAAATGCTCCCCTGTCTGCTGCCATTTCAAT 150552 | || || || | ||||| ||||||| ||| Sbjct 3420358 TGAACGCACCACGATCTGCGGCCATTTTAAT 3420388 >seq5277 Length=7425378 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| || |||| || |||||||| || |||||||||||| Sbjct 1193011 GCCACCACGGAGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGA 1192952 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | ||||| || || || || ||| ||||||| || |||||||| || || Sbjct 1192951 AAGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGG 1192892 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || ||||| ||| || || | | || | ||| || | || || || Sbjct 1192891 AATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGAC 1192832 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||||| ||||| || || || || || ||||| Sbjct 1192831 CTCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1192784 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | |||||| || || || | || || || || || ||||||||||| Sbjct 1193239 GCCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGA 1193180 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || | || || ||||| ||||||||| | || ||||| |||||||| || || Sbjct 1193179 CAACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGG 1193120 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||| ||||| || || || | | || | || || | ||||| || Sbjct 1193119 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAAC 1193060 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||||| |||| || || ||||| || ||||| Sbjct 1193059 CTCCAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012 >seq4172 Length=1033301 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||||| ||| ||||| | || || || ||||| |||||||| ||| Sbjct 906967 GCCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGA 907026 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 || |||| || | || || || || || || || | |||| ||| |||||||| || | Sbjct 907027 CAGAGTGCGTCCA-TCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGG 907085 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || || || ||||| || || || | | || | || || | || || | Sbjct 907086 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAA 907145 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || | ||| | |||||||||||||| || || ||||| || ||||| Sbjct 907146 CCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488510846182800