Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq5214 93.3 4e-14
seq5277 91.5 1e-13
seq4172 86.0 6e-12
>seq5214
Length=3698012
Score = 93.3 bits (102), Expect = 4e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 151277 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACT 151336
|||| |||||| || || || || || || ||| | ||||| |||||| |||| | ||
Sbjct 3421107 TTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCGGCGCGGAATACTCAACG 3421166
Query 151337 ATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGG 151396
||||| | |||||||||||||| || || || ||| || ||||| || | |
Sbjct 3421167 ATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCTG 3421226
Query 151397 TTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTC 151437
||||| | |||||| | | ||||||||| ||||||||||
Sbjct 3421227 TTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTC 3421267
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316
||||| || || || ||||| |||||||||| |||||||| ||||| || |||||||||
Sbjct 3523122 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 3523063
Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376
|| ||| || ||| | | ||| | || || | ||||| || |||| ||| |
Sbjct 3523062 TCCTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATG 3523003
Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|||||||| || | || || ||||| || |||||
Sbjct 3523002 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 3522968
Score = 86.0 bits (94), Expect = 6e-12
Identities = 111/151 (74%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 150403 TGTGCGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGA 150462
|||||| | ||||||||||||||| |||||||| ||||| ||| | ||| | ||
Sbjct 3420239 TGTGCGCAGATAGTACATGCCGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGA 3420298
Query 150463 CGCCATTTTAGGCAAAG-TAGGGTTTGCCATGTACACGTTGAACGATTGACTTTGATCGA 150521
|| || ||| | | || | || | ||||| | | ||||||||| |||||||| ||||
Sbjct 3420299 CGTCAGTTT-GCCGTAGTTCGGCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGA 3420357
Query 150522 TAAATGCTCCCCTGTCTGCTGCCATTTCAAT 150552
| || || || | ||||| ||||||| |||
Sbjct 3420358 TGAACGCACCACGATCTGCGGCCATTTTAAT 3420388
>seq5277
Length=7425378
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
||| || || | ||| | ||| || |||| || |||||||| || ||||||||||||
Sbjct 1193011 GCCACCACGGAGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGA 1192952
Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
| || | ||||| || || || || ||| ||||||| || |||||||| || ||
Sbjct 1192951 AAGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGG 1192892
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
||||| || ||||| ||| || || | | || | ||| || | || || ||
Sbjct 1192891 AATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGAC 1192832
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | ||| | |||||||| ||||| || || || || || |||||
Sbjct 1192831 CTCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1192784
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
||| || || | |||||| || || || | || || || || || |||||||||||
Sbjct 1193239 GCCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGA 1193180
Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
|| || | || || ||||| ||||||||| | || ||||| |||||||| || ||
Sbjct 1193179 CAACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGG 1193120
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|||||||| ||||| || || || | | || | || || | ||||| ||
Sbjct 1193119 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAAC 1193060
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | ||| | |||||||| |||| || || ||||| || |||||
Sbjct 1193059 CTCCAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012
>seq4172
Length=1033301
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
|||||| || | ||||| ||| ||||| | || || || ||||| |||||||| |||
Sbjct 906967 GCCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGA 907026
Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302
|| |||| || | || || || || || || || | |||| ||| |||||||| || |
Sbjct 907027 CAGAGTGCGTCCA-TCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGG 907085
Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362
| || || || ||||| || || || | | || | || || | || || |
Sbjct 907086 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAA 907145
Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
| || | ||| | |||||||||||||| || || ||||| || |||||
Sbjct 907146 CCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 488510846182800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |