Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5277 187 5e-42 seq5214 163 6e-35 seq4172 149 1e-30 seq5375 86.0 1e-11 >seq5277 Length=7425378 Score = 187 bits (206), Expect = 5e-42 Identities = 180/230 (78%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| || || ||||||||||| || || ||||| || ||| | | || Sbjct 1192999 ACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCC 1192940 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || || |||||||| |||| || |||||||| || || || ||||| Sbjct 1192939 ATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTT 1192880 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| || || ||||| ||||||||||| ||| || || |||||||| || Sbjct 1192879 GTCCTGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAAT 1192820 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTTTTCT 82824 |||||||| ||||| ||||| ||||| ||||||||| | || || |||| Sbjct 1192819 GGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTGAT-TTATTCT 1192771 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || ||| ||||| ||||| || ||||| || ||||| || || || || | Sbjct 1193468 TACCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 1193409 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| ||||| | |||||||| || ||||| || | || |||||||||| Sbjct 1193408 AAAGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAG 1193349 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| || ||||| || || || || || ||||| |||||| |||||| | Sbjct 1193348 GAATTCCCTCCTTGTCCTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAA 1193289 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || || || || || | |||||||| || || ||||| Sbjct 1193288 CCTCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 120 bits (132), Expect = 6e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||||||||| || |||||||| || || || || || | | | || Sbjct 1194139 ACGCAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCC 1194080 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||| || ||||| || || || | || |||||||| || || || || || Sbjct 1194079 ATCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCTTT 1194020 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || || || ||||| |||||| || || || |||| |||||| Sbjct 1194019 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAACCTCCAGAGTTAT 1193960 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || |||| ||||| || || || ||||| Sbjct 1193959 GGTTTTACCGGTCAGGGTCTTCACGAAGATTTGCAT 1193924 >seq5214 Length=3698012 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || |||||| || ||||||| ||| || || ||||| || ||||| ||||| Sbjct 3523195 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 3523136 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || || || ||||| ||||| || | || ||||||||||| Sbjct 3523135 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 3523076 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| || || |||||||| ||||| |||||||| || ||||| ||||| || Sbjct 3523075 AATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGAC 3523016 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| || | ||||| || || |||||||| Sbjct 3523015 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 3522968 >seq4172 Length=1033301 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || || |||| ||| || || ||||| || || || || || Sbjct 906740 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 906799 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || || ||||| || ||||| | | || |||||||| || Sbjct 906800 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 906859 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| || || ||||| || || ||||| || || ||||| ||| || || Sbjct 906860 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACC 906919 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||||||||| | ||||| ||||| |||||||| Sbjct 906920 TCCAAAGTGATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 906966 >seq5375 Length=646746 Score = 86.0 bits (94), Expect = 1e-11 Identities = 184/269 (68%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 198339 CTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGA 198398 || ||||| | ||||| | ||| || | | || || || ||||| | || || | Sbjct 627726 CTGTGGAACTCGGCGCAACTGCAGCTGGTGCGCGAGGGCAAGATGCACGGCTTCTTGCGC 627785 Query 198399 ATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAA--GACGCTTTGAGTT 198456 ||||||||||| |||||||| || |||||||| || |||||| | ||| | ||| | Sbjct 627786 ATGTACTGGGCCAAAAAGATTCTCGAATGGACCGCCACGCCGGAACTGGCGC-TGGAG-T 627843 Query 198457 ATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTA 198515 | ||| |||||| | |||||| || || || ||| ||||| ||||| ||||| Sbjct 627844 ACGCGATCCTGCTAAACGACAAGTACAGCCTTGATGG-ACGCGATCCCAACGGCTACGTG 627902 Query 198516 GGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATTT 198575 || || |||||||| || |||| | || ||| | ||||| || | | || || Sbjct 627903 GGCTGCATGTGGTCCATCGGCGGCGTCCACGATATGGGATGGAAGGAGCGCGCCATTTTC 627962 Query 198576 GGGAAGATAAGATATATGAATTATGAGGG 198604 || ||| | | || ||||| ||| |||| Sbjct 627963 GGCAAGGTTCGGTACATGAACTATCAGGG 627991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981758905020431