Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq5375 84.2 4e-11 >seq5375 Length=646746 Score = 84.2 bits (92), Expect = 4e-11 Identities = 170/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 183037 CAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAA 183096 ||| | ||| || || | || || || ||||| | || || || ||||||||||| ||| Sbjct 627741 CAACTGCAGCTGGTGCGCGAGGGCAAGATGCACGGCTTCTTGCGCATGTACTGGGCCAAA 627800 Query 183097 AAGATACTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATCTATATGAAC 183156 ||||| || |||||||| || |||||| || || || ||| | ||| Sbjct 627801 AAGATTCTCGAATGGACCGCCACGCCGGAACTGGCGCTGGAGTACGCGATCCTGCTAAAC 627860 Query 183157 AATAAGTACGAACTAGACGGTACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCTAT 183215 | |||||| || || || ||| ||||| ||||| ||||| || || |||||||| || Sbjct 627861 GACAAGTACAGCCTTGATGG-ACGCGATCCCAACGGCTACGTGGGCTGCATGTGGTCCAT 627919 Query 183216 TTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATAT 183275 |||| | ||||||| | ||||| || | | || || || ||| | | || || Sbjct 627920 CGGCGGCGTCCACGATATGGGATGGAAGGAGCGCGCCATTTTCGGCAAGGTTCGGTACAT 627979 Query 183276 GAATTATGAG 183285 ||| ||| || Sbjct 627980 GAACTATCAG 627989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903349892257440