Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4172 120 2e-22 seq5277 109 4e-19 seq5214 105 4e-18 seq4488 104 2e-17 >seq4172 Length=1033301 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||||||| | |||| ||| || || |||||||| ||||| Sbjct 906740 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 906799 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||| || |||||||| || |||||||||||||||||| | || Sbjct 906800 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 906859 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || ||| |||| || | ||| ||| | || || Sbjct 906860 ATTCCTTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCGATGGTATCGGAAGGCTCGAC 906918 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || ||||| | || || |||||||||||||| Sbjct 906919 CTCCAAAGTGATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 906966 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | |||||||| | |||| ||| ||||| |||||||| ||||| Sbjct 906968 CCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 907027 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||| || |||||||| ||||||||||||||||||||| | || Sbjct 907028 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGG 907087 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| || | || | ||| ||| | || || Sbjct 907088 ATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTATCGGAAGGCTCAAC 907146 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 907147 CTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||||||| | |||| ||| || || ||||| |||||||| | || ||| | Sbjct 907207 ACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTACGTCC 907266 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || |||| || |||||||| || |||||||||||||||||| | || | || || || Sbjct 907267 ATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTT 907326 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || ||| |||| || | ||| ||| | || || || | |||| Sbjct 907327 GTCCTGGATCTTGGCCTTC-ACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGA 907385 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || || | || || || ||||||||||| Sbjct 907386 TGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 907422 Score = 87.8 bits (96), Expect = 1e-12 Identities = 165/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||||| || || || || || || ||||| |||||||| Sbjct 907424 CCTCCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGAC 907483 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| |||| || |||||||| ||||||||||||||||||||| | || Sbjct 907484 AAAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 907543 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| |||| || | ||| ||| | || || Sbjct 907544 ATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCGATGGTATCGGAAGGCTCAAC 907602 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGTT 33761 || | ||||| || || || || || || || || || || |||||| | | ||| || Sbjct 907603 CTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATATTGGCTGTTTT 907662 >seq5277 Length=7425378 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | ||||| || || || ||| || || |||||||| ||||| Sbjct 1193467 ACCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 1193408 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || ||||| |||||||| || || || | ||||||||||||| | || Sbjct 1193407 AAGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGG 1193348 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| |||||| ||| || | || | ||| || | ||| | Sbjct 1193347 AATTCCCTCCTTGTCCTGAATTTTAGCCTTC-ACGTTCTCAATGGTATCAGAAGGTTCAA 1193289 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| |||||||| || | || ||||| ||||| ||||| Sbjct 1193288 CCTCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || || || || || || |||||||||||||| || |||||| | Sbjct 1194367 ACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCC 1194308 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| ||||| || || |||||||| |||||||||||||| ||| | || | || || || Sbjct 1194307 GTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCCTT 1194248 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||||| ||| |||| || | |||||| || ||||| || | || | Sbjct 1194247 GTCCTGGATTTTAGCCTTC-ACATTCTCAATGGTGTCAGATGGCTCCACCTCCAGTGTAA 1194189 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || |||| || || || ||||| ||||| Sbjct 1194188 TGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || || || ||||| |||||||| ||||| Sbjct 1193694 CCACCGCGAAGACGGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGAT 1193635 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || || | || || |||||||||||||| |||||||||||| | || Sbjct 1193634 AGGGTTCGTCCATCCTCAAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGA 1193575 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| || ||| |||| || | ||| || | ||| || Sbjct 1193574 ATGCCCTCCTTGTCCTGAATCTTGGCCTTC-ACATTCTCAATGGTATCAGAAGGTTCAAC 1193516 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || ||||| || || || ||||| |||||| Sbjct 1193515 CTCCAGAGTGATGGTTTTTCCGGTTAAGGTCTTCACGAAGATTTGCATA 1193467 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || || ||| || || |||||||| ||||| Sbjct 1193922 CCACCACGAAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 1193863 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||| || || |||||||| | ||||||||||||| | || Sbjct 1193862 AGAGTGCGACCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGA 1193803 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| |||||| | | |||| || | ||| || | || || Sbjct 1193802 ATGCCCTCCTTGTCCTGAATTTT-GGCCTTTACATTCTCAATGGTATCAGAGGGCTCAAC 1193744 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || ||||| || || || ||||||||||| Sbjct 1193743 TTCAAGGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 1193696 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| |||||||| || |||||| |||||| || |||||||| || || Sbjct 1194150 CCACCCCGAAGACGCAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 1194091 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || |||| ||| || || || ||||| | ||||||||||||| | || Sbjct 1194090 AAGGTACGGCCATCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 1194031 Query 33643 ACACCTTCTTTGTC 33656 | || |||||||| Sbjct 1194030 ATGCCCTCTTTGTC 1194017 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| ||||| || |||||||||||||| Sbjct 1193010 CCACCACGGAGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAA 1192951 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || || |||||||| |||| |||||||||||| | || Sbjct 1192950 AGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGA 1192891 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| || ||| |||| || | || ||| | || || Sbjct 1192890 ATGCCCTCCTTGTCCTGAATCTTGGCCTTC-ACATTCTCAATCGTATCGGAAGGCTCGAC 1192832 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || || || || || || |||||||||||||| Sbjct 1192831 CTCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1192784 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| |||||||| || | ||| ||| || || ||||||||||| || Sbjct 1193238 CCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGAC 1193179 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || |||| ||| || || |||||||| | ||||||||||||| | || Sbjct 1193178 AACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGG 1193119 Query 33643 ACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 1193118 ATGCCTTCCTTGTC 1193105 >seq5214 Length=3698012 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || ||| | |||||| || | |||| ||| || || ||||| || || | Sbjct 3523196 CACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAG 3523137 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||| ||||| | || |||| || || || || || |||| ||||||||||||| | | Sbjct 3523136 AGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAG 3523077 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| ||| || | || ||||| || | || || | ||| Sbjct 3523076 GAATTCCTTCTTTGTCCTGAATCTT-GGCTTTAACATTTTCGATAGTATCCGACGGTTCG 3523018 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | || || || ||||||||||| Sbjct 3523017 ACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 3522968 >seq4488 Length=533506 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| ||| || || ||| || || |||||||| || || Sbjct 135531 CCACCGCGCAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 135472 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || ||||| || |||| ||||||||||||| | || Sbjct 135471 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 135412 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| ||| || ||| |||| || | ||||||| | ||||| Sbjct 135411 ATGCCCTCCTTGTCCTGAATCTTAGCCTTC-ACATTCTCGATGGTGTCGGAAGGCTCCAC 135353 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || || || || | ||||| |||||||||||||| || Sbjct 135352 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCATGGT 135302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328682250991680