Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4172 113 1e-19 seq5277 109 1e-18 seq4488 102 2e-16 seq5214 84.2 5e-11 >seq4172 Length=1033301 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || |||||||| || || ||||||||||| || || ||| || Sbjct 906963 CAGATCTTTGTCAAGACTCTCACAGGCAAGACCATCACTTTGGAGGTCGAGCCTTCCGAT 906904 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || |||||||| || || || Sbjct 906903 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCAGATCAGCAG 906844 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||||||||||||| |||| |||||| | ||| || |||| |||||| || Sbjct 906843 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAACATC 906784 Query 206353 CAGAAAGAGTCTACT 206367 ||||| ||||| ||| Sbjct 906783 CAGAAGGAGTCCACT 906769 Score = 100 bits (110), Expect = 7e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||||||||| || || ||| || || |||| Sbjct 907407 AAGACTCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGATACCATCGAGAAT 907348 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || |||||| || || || | | |||||| Sbjct 907347 GTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTTTGATCTTC 907288 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| ||||||||||| | || ||| ||||||| ||| ||||||| ||||| Sbjct 907287 GCCGGAAAGCAGCTGGAAGATGGACGTACCTTGTCCGATTATAACATCCAGAAGGAGTCC 907228 Query 206365 ACT 206367 ||| Sbjct 907227 ACT 907225 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||||||||| || || ||| || || |||| || ||| Sbjct 907626 ACTGGCAAGACCATCACTTTGGAGGTTGAGCCTTCCGATACCATCGAGAATGTGAAGGCC 907567 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || |||||| || || || | | || |||||||||||| Sbjct 907566 AAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTTTGATTTTCGCCGGAAAG 907507 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| || ||| | |||||| ||||||| ||| ||||||| || || || |||||| Sbjct 907506 CAGCTGGAGGACGGACGTACTTTGTCCGATTATAACATCCAGAAGGAATCGACCCTTCAC 907447 >seq5277 Length=7425378 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| |||||| |||| || ||| |||||| || | || Sbjct 1193255 AAGACCCTTACCGGTAAAACCATCACTCTGGAGGTTGAACCTTCTGATACCATTGAGAAC 1193314 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || || || |||||| || || || | || |||||| Sbjct 1193315 GTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTCATCTTC 1193374 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| |||||||||||||| | ||| | |||| |||||| ||||||| |||||| Sbjct 1193375 GCAGGAAAACAGTTGGAAGATGGTCGCACTCTTTCCGACTACAACATCCAGAAGGAGTCT 1193434 Query 206365 ACTCTTCACCTTGTT 206379 || |||||| | ||| Sbjct 1193435 ACCCTTCACTTGGTT 1193449 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || | || || || || || |||||||| || || Sbjct 1192781 AAAATG---CAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACTTTGGAGGTCGAG 1192837 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||| || || | || || ||| |||||||| || || || || ||| || Sbjct 1192838 CCTTCCGATACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCA 1192897 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 || || |||| ||||| ||||| |||||| | |||||||| | ||| | ||||| Sbjct 1192898 GATCAGCAGCGACTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGTACTCTTTCCGAT 1192957 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||||| | |||||||| || || |||||| | ||| Sbjct 1192958 TACAACATTCAGAAAGAATCCACCCTTCACTTGGTT 1192993 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| || ||| |||| || || ||||| || | || Sbjct 1193939 AAGACCCTGACCGGTAAAACCATAACTCTGGAGGTTGAGCCCTCTGATACCATTGAGAAC 1193998 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||| || ||| || || || | || || ||| Sbjct 1193999 GTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGATCAGCAGCGTCTCATTTTC 1194058 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||| ||||| | || ||| | || |||||| ||||||||||||| Sbjct 1194059 GCTGGTAAGCAACTGGAGGATGGCCGTACCTTGTCGGACTACAACATCCAGAAAGAGTCC 1194118 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||| | || ||| | ||||| Sbjct 1194119 ACTCTGCACTTGGTGTTGCGTCTTCG 1194144 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || || || |||| ||||| |||||||| | || Sbjct 1194167 AAGACCCTAACTGGCAAGACCATTACACTGGAGGTGGAGCCATCTGACACCATTGAGAAT 1194226 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || || || |||||| || ||| || | | ||||| Sbjct 1194227 GTGAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGTTTGATCTTT 1194286 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||||||||| || ||| | ||| || ||||||||||| ||||||| || || Sbjct 1194287 GCCGGCAAGCAGTTGGAGGACGGACGCACTCTGTCCGATTACAACATCCAGAAGGAATCG 1194346 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 1194347 ACCCTTCAC 1194355 >seq4488 Length=533506 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || || || ||||| ||||| ||||| ||| ||| Sbjct 135308 CAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCCGAC 135367 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || ||| || || || Sbjct 135368 ACCATCGAGAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 135427 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || || | || |||||| || Sbjct 135428 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGACTACAACATC 135487 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || || || Sbjct 135488 CAGAAGGAGTCGACCCTCCATCTGGT 135513 >seq5214 Length=3698012 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| | || || ||| || || || ||||| Sbjct 3522983 AAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCGGATACTATCGAAAAT 3523042 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || |||||||||||| || || || | || ||||| Sbjct 3523043 GTTAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 3523101 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||||||||| | || | | || || ||| | ||||| ||||| Sbjct 3523102 CGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAGTC 3523161 Query 206364 TACTCTTCAC 206373 ||| | ||| Sbjct 3523162 CACTTTGCAC 3523171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181738593653109