Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq5074 280 2e-70 >seq5074 Length=4358836 Score = 280 bits (310), Expect = 2e-70 Identities = 473/677 (70%), Gaps = 22/677 (3%) Strand=Plus/Plus Query 146841 GAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTC-GGGGGT 146899 ||| || || ||||||| ||| | | | ||| ||||||||||| |||| || || Sbjct 1652252 GAAGTCTTCGATGTCCTGCACTTGACGCTTGATCAACAGCTTGGGGAATGGTCTCGGCGT 1652311 Query 146900 TC-CTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCC 146958 || || ||||||| ||||| ||||||||||| || ||||||||||||| ||| ||| Sbjct 1652312 TCGCT--CCAGCTGCTCCTTCAGCGGCTCCACGTGATTCAGGTAGACGTGCGTGTCGCCC 1652369 Query 146959 AGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGC 147018 | ||||||||||||||| || ||||| || || || || ||||| | ||||| ||||||| Sbjct 1652370 ATGGTGTGCACAAAGTCGCCTGGCTTCAGACCCGTTACATGGGCGATCATGTGGGTGAGC 1652429 Query 147019 AGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTAC 147078 || | |||| ||| ||||||||||| || ||||| |||||||| | ||| |||||| Sbjct 1652430 AGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGACCCATGTCGGCGCTCCTTTGGTAC 1652489 Query 147079 AGCTGGCACGAGAGCTCCCCG------TCGGCCACGTAAAACTGGCACAGGATGTGGCAC 147132 |||||||| ||||| || ||| | || || || ||||| |||| ||| ||| Sbjct 1652490 AGCTGGCAGGAGAGTTCGCCGCGCGTCTGGGAGACATAGAACTGCGCCAGGCAGTGACAC 1652549 Query 147133 GGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG 147192 |||||||| ||||| || | ||||| || ||||| ||||| | | | |||||| Sbjct 1652550 GGCGGCAGGGCCATTTTCGGAATGTCCGATGGATTCCATGCCGACATGATGATGCGCCTG 1652609 Query 147193 CTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCC 147252 | ||| || || || ||||| ||| | || ||| || | ||||| || Sbjct 1652610 TCCGAGGGATTATTCCGGATGGTGTCGATCACCTGTCGCAACTGATCGATGCCCTTTCCA 1652669 Query 147253 CCGTAGTTTGTC-CCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTA 147311 |||| | ||| ||||| | ||| || |||||||||| ||||||||||||||| Sbjct 1652670 GTGTAG-TCGTCATCGCAGGTGCCATACTCCGCTCCAAAGTGCCGCCACTGGAAGCCGTA 1652728 Query 147312 CACTGGCCCCAGGTCGCC--GGGCTTTCTGTGCGAGAAGCCCGCCCGCTTG---AGAAAC 147366 ||| || ||||| || || ||| || | | | | || ||||| || ||| Sbjct 1652729 CACCGGGCCCAGATCTCCAACGGCACGCTCCGTGTG-----CCCCAGCTTGTCCAGGAAC 1652783 Query 147367 TCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCC 147426 || || | || ||||||||||| ||| |||||| ||| ||| | ||| Sbjct 1652784 TCCCTGGTGCTGTTCCCGTCCCAGATGTGCACGTTCTTGGCCTGCAGCAGCTTGGCATCC 1652843 Query 147427 GTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTG 147486 || |||| | |||||||||||||||||| ||| | | | ||||| | |||| Sbjct 1652844 GTCTTGCCCGCCACGAACCAGAGCAGCTCCTCGGCCACCGCGCGGAAGAAGACGCGCTTG 1652903 Query 147487 GTGGTCAGCAGGGGGAA 147503 |||||||||| ||||| Sbjct 1652904 GTGGTCAGCAAAGGGAA 1652920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583448403045600