Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq5242 212 9e-49
seq5277 125 1e-22
seq5214 104 3e-16
seq5221 89.7 7e-12
>seq5242
Length=5320397
Score = 212 bits (234), Expect = 9e-49
Identities = 339/483 (70%), Gaps = 8/483 (2%)
Strand=Plus/Minus
Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855
|||| |||||||| || ||||||| |||||||| || || | ||| | | |||
Sbjct 3388514 AGGCTGAGGCCTCTTTCTGGACCGTAGAGGAGGTGGATCTGTCCAAGGACCTGACCGACT 3388455
Query 1455856 GGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCC 1455915
|| || | ||||||||||| || |||||| |||||| || ||||| ||| |||
Sbjct 3388454 GGCACCGCCTCAAGGACGACGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTT-GCC 3388396
Query 1455916 GCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTG 1455975
||| |||||||||||| |||||||||| | || || | | ||||| || |
Sbjct 3388395 GCCTCCGATGGCATCGTCAATGAGAACCTGGTGGAGCGGTTCAGCCAGGAGGTGCAGATC 3388336
Query 1455976 CCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACC 1456035
| ||||| || | || ||||| |||||||||||||| || ||| | ||||| || |
Sbjct 3388335 ACGGAGGCCCGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATG 3388276
Query 1456036 TACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGC 1456095
||| | ||||||||||| ||| || ||| ||| | || ||| |||| || |
Sbjct 3388275 TACAGCGTGCTGATCGACACTTACATCCGGGATCCGCACCAGCGGGAGTACCTGTTCAAC 3388216
Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA--TCA 1456153
|||||||| ||| ||||| |||||| | ||||| |||||||| || |||| ||
Sbjct 3388215 GCCATCGAGACGATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCTCTGTCCTGGATCTCC 3388156
Query 1456154 ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCAT 1456212
| | | |||| | || | ||||| || ||| ||||||| ||| ||||||||
Sbjct 3388155 TCCAAGTCGGCC----AATTTCGGGGAGCGCATCATCGCATTTGCCGCCGTGGAGGGCAT 3388100
Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272
||| ||| ||||| ||| | |||| || ||||| ||||||||||| || ||||| ||
Sbjct 3388099 CTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGG 3388040
Query 1456273 TCT 1456275
||
Sbjct 3388039 ACT 3388037
Score = 98.7 bits (108), Expect = 1e-14
Identities = 158/222 (71%), Gaps = 5/222 (2%)
Strand=Plus/Minus
Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580
|||||||| ||| || || || ||| | ||||| ||| || | ||||| |||
Sbjct 3387929 AGATCATCCGCGATGCGGTGCTCATTGAGCAGGAGTTCCTCACAGACGCCCTGCCTGTGA 3387870
Query 1456581 CGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639
||||||||||||||| | ||| | |||| |||||||||||| ||| || || || |
Sbjct 3387869 ACCTCATCGGCATGAACTGTGACC--TGATGTCCCAGTACATTGAGTTT-GTGGCGGATC 3387813
Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699
|| |||| | || | | ||| || ||| |||| || ||||||||| |
Sbjct 3387812 GCTTGCTGGTGGAGTTGGGCGTTGGC-AAGATCTACAACACCAAGAACCCGTTCAACTTC 3387754
Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741
|||||| |||||||||| || ||||||||||| || ||||||
Sbjct 3387753 ATGGAGATGATCTCGCTGGACGGCAAGACCAATTTCTTCGAG 3387712
>seq5277
Length=7425378
Score = 125 bits (138), Expect = 1e-22
Identities = 237/346 (68%), Gaps = 2/346 (1%)
Strand=Plus/Plus
Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931
|| |||| ||||| || || || | || |||||||| | || || | |||||||
Sbjct 4990700 AACCGCAACATGGCGCAGCGCGATTGGATGGGCTCGATGATC-TTCTCGCTGGTGTTGCA 4990758
Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991
||||||||| || ||||| || || | | | |||||||| || || ||||| ||
Sbjct 4990759 GGCCAGGGCGAAGCGCGTGGTGCTGCTGTAGATCTCCATGGTGCGGCGCAGCGCCTGCTG 4990818
Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051
||| || ||| | || ||| |||||||| || || | ||||||||| || ||| ||||
Sbjct 4990819 GGCACCCTCCGTCATGCTGTCCGCCTCGTCCAGTATCACGATCTTGTGCCGGCCGCGCGG 4990878
Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111
|| ||| ||| | ||| ||||| | |||||||| || || | || ||
Sbjct 4990879 CAATGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTGCGCACCACATCGATTCCTCG 4990938
Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCG 333171
||| | || || || || |||||||| ||||| | | | | |||| ||| | |
Sbjct 4990939 CTCATTGGAGGCATTCAGCTCGAGCACAGCCTCTTTGTAGCTGTCTCCCAGGAGAATCCT 4990998
Query 333172 CGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217
|||||| ||| ||| | |||||||||||| ||| ||||| |||
Sbjct 4990999 CGCCAGACACTGGATCGTGGTGGTCTTGCCCACGCCTGGCGGTCCC 4991044
>seq5214
Length=3698012
Score = 104 bits (114), Expect = 3e-16
Identities = 158/224 (71%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|| ||||||||||| || ||||| ||| |||||||| || |||||| | ||| |
Sbjct 3421597 GGTGGCGGCAAGCGGCCCGGTGCCTTCGCCATTTACCTGGAGCCCTGGCACTCGGACGTG 3421538
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
|| | | ||||| ||||| |||||| ||||| ||| |||||| | |||| |||
Sbjct 3421537 TTCGAGTTCCTGGAACTCAAGAAGAACACCGGCA----AGGAGGAGAATC--GCGCCCGC 3421484
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967
|||||||| |||| ||| |||| ||| || || ||| ||| | | | || | |
Sbjct 3421483 GATCTCTTCTACGCCCTCTGGATACCCGATCTTTTCATGAAACGCGTCGAGGCCAACGGG 3421424
Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGA 262011
||||||||||| | || ||| | | ||||||||||||||
Sbjct 3421423 GACTGGTCGCTGATGTGTCCGCACAAATGCCCCGGCCTGCACGA 3421380
Score = 98.7 bits (108), Expect = 1e-14
Identities = 194/287 (68%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955
||||| ||| ||| |||||| || |||| ||||| ||| || | ||| || |
Sbjct 3421884 TGTCGGAGCGGTTCTTCACCCACGCCTCGCCAACGCTTTTTGCCGCAGCCACAAATCGGC 3421825
Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015
|||| ||||||||||| ||| || ||||| |||||| ||||||||||||||||
Sbjct 3421824 CGCAACTGTCGTCGTGCTTCCTGCTGACCATGACGGCCGACTCGATCGAGGGCATCTTCA 3421765
Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075
| || | | |||||||| | ||||| || |||| || ||||| || | | |
Sbjct 3421764 AGTCGGTGGAACAGTGCGCCATGATCTCGAAATCGGCAGGAGGCATTGGACTGAATGTCC 3421705
Query 260076 ACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTG 260135
| | || ||| |||| ||| | | ||||| || ||| ||||| ||||| |
Sbjct 3421704 ATTGCATCCGGGCCAAGGGCACCTCCATCTGCGGCACGAATGGCACCTCCAATGGCCTGG 3421645
Query 260136 TGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
| |||||||| | || || ||| | ||| || ||||| || |||
Sbjct 3421644 TACCCATGCTCAGGGTCTTCAACAATGTGGCACGTTACGTGGATCAG 3421598
Score = 86.0 bits (94), Expect = 9e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 263341 GGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTC 263400
||||||||||| |||||||||||||||||||| ||| ||||| ||||| ||||| |||
Sbjct 3420271 GGCCTCAAGACCGGCATGTACTATCTGCGCACAAAGCCAGCTGCGAACGCGATTCAGTTC 3420212
Query 263401 ACCGTCGATCAG 263412
||||| ||| ||
Sbjct 3420211 ACCGTGGATAAG 3420200
>seq5221
Length=5268673
Score = 89.7 bits (98), Expect = 7e-12
Identities = 104/138 (75%), Gaps = 3/138 (2%)
Strand=Plus/Minus
Query 1817496 GCCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCACGTTCATGGTGTG 1817555
||| |||| ||| ||||| |||||||||| | | ||| || | | | | |||
Sbjct 253437 GCCCATGACGGGTTTGTTCGCCTGCGGCGTGATGATCTGCCTGGGCGTGATGTGGATGTT 253378
Query 1817556 CGTCACCTCGGCGCGCGCGTCTCA--GACTGGGGCACATGGAGGTTCATCTCGTCGCCGT 1817613
| |||||||||||||| || || ||||| ||||| || || ||||||||||||||||
Sbjct 253377 CTCCACCTCGGCGCGCGTCTC-CATGGACTGCGGCACGTGCAGATTCATCTCGTCGCCGT 253319
Query 1817614 CAAAGTCGGCATTGTAGG 1817631
| || |||||||||||||
Sbjct 253318 CGAAATCGGCATTGTAGG 253301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177287562971498
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |