Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5242 212 9e-49 seq5277 125 1e-22 seq5214 104 3e-16 seq5221 89.7 7e-12 >seq5242 Length=5320397 Score = 212 bits (234), Expect = 9e-49 Identities = 339/483 (70%), Gaps = 8/483 (2%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| |||||||| || ||||||| |||||||| || || | ||| | | ||| Sbjct 3388514 AGGCTGAGGCCTCTTTCTGGACCGTAGAGGAGGTGGATCTGTCCAAGGACCTGACCGACT 3388455 Query 1455856 GGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCC 1455915 || || | ||||||||||| || |||||| |||||| || ||||| ||| ||| Sbjct 3388454 GGCACCGCCTCAAGGACGACGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTT-GCC 3388396 Query 1455916 GCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTG 1455975 ||| |||||||||||| |||||||||| | || || | | ||||| || | Sbjct 3388395 GCCTCCGATGGCATCGTCAATGAGAACCTGGTGGAGCGGTTCAGCCAGGAGGTGCAGATC 3388336 Query 1455976 CCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACC 1456035 | ||||| || | || ||||| |||||||||||||| || ||| | ||||| || | Sbjct 3388335 ACGGAGGCCCGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATG 3388276 Query 1456036 TACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGC 1456095 ||| | ||||||||||| ||| || ||| ||| | || ||| |||| || | Sbjct 3388275 TACAGCGTGCTGATCGACACTTACATCCGGGATCCGCACCAGCGGGAGTACCTGTTCAAC 3388216 Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA--TCA 1456153 |||||||| ||| ||||| |||||| | ||||| |||||||| || |||| || Sbjct 3388215 GCCATCGAGACGATGCCGGCGGTGAAGCGCAAGGCTGACTGGGCTCTGTCCTGGATCTCC 3388156 Query 1456154 ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCAT 1456212 | | | |||| | || | ||||| || ||| ||||||| ||| |||||||| Sbjct 3388155 TCCAAGTCGGCC----AATTTCGGGGAGCGCATCATCGCATTTGCCGCCGTGGAGGGCAT 3388100 Query 1456213 CTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| ||| ||||| ||| | |||| || ||||| ||||||||||| || ||||| || Sbjct 3388099 CTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGG 3388040 Query 1456273 TCT 1456275 || Sbjct 3388039 ACT 3388037 Score = 98.7 bits (108), Expect = 1e-14 Identities = 158/222 (71%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| ||| || || || ||| | ||||| ||| || | ||||| ||| Sbjct 3387929 AGATCATCCGCGATGCGGTGCTCATTGAGCAGGAGTTCCTCACAGACGCCCTGCCTGTGA 3387870 Query 1456581 CGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 ||||||||||||||| | ||| | |||| |||||||||||| ||| || || || | Sbjct 3387869 ACCTCATCGGCATGAACTGTGACC--TGATGTCCCAGTACATTGAGTTT-GTGGCGGATC 3387813 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699 || |||| | || | | ||| || ||| |||| || ||||||||| | Sbjct 3387812 GCTTGCTGGTGGAGTTGGGCGTTGGC-AAGATCTACAACACCAAGAACCCGTTCAACTTC 3387754 Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||||| |||||||||| || ||||||||||| || |||||| Sbjct 3387753 ATGGAGATGATCTCGCTGGACGGCAAGACCAATTTCTTCGAG 3387712 >seq5277 Length=7425378 Score = 125 bits (138), Expect = 1e-22 Identities = 237/346 (68%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931 || |||| ||||| || || || | || |||||||| | || || | ||||||| Sbjct 4990700 AACCGCAACATGGCGCAGCGCGATTGGATGGGCTCGATGATC-TTCTCGCTGGTGTTGCA 4990758 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991 ||||||||| || ||||| || || | | | |||||||| || || ||||| || Sbjct 4990759 GGCCAGGGCGAAGCGCGTGGTGCTGCTGTAGATCTCCATGGTGCGGCGCAGCGCCTGCTG 4990818 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 ||| || ||| | || ||| |||||||| || || | ||||||||| || ||| |||| Sbjct 4990819 GGCACCCTCCGTCATGCTGTCCGCCTCGTCCAGTATCACGATCTTGTGCCGGCCGCGCGG 4990878 Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111 || ||| ||| | ||| ||||| | |||||||| || || | || || Sbjct 4990879 CAATGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTGCGCACCACATCGATTCCTCG 4990938 Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCG 333171 ||| | || || || || |||||||| ||||| | | | | |||| ||| | | Sbjct 4990939 CTCATTGGAGGCATTCAGCTCGAGCACAGCCTCTTTGTAGCTGTCTCCCAGGAGAATCCT 4990998 Query 333172 CGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 |||||| ||| ||| | |||||||||||| ||| ||||| ||| Sbjct 4990999 CGCCAGACACTGGATCGTGGTGGTCTTGCCCACGCCTGGCGGTCCC 4991044 >seq5214 Length=3698012 Score = 104 bits (114), Expect = 3e-16 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||||||||||| || ||||| ||| |||||||| || |||||| | ||| | Sbjct 3421597 GGTGGCGGCAAGCGGCCCGGTGCCTTCGCCATTTACCTGGAGCCCTGGCACTCGGACGTG 3421538 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | ||||| ||||| |||||| ||||| ||| |||||| | |||| ||| Sbjct 3421537 TTCGAGTTCCTGGAACTCAAGAAGAACACCGGCA----AGGAGGAGAATC--GCGCCCGC 3421484 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| |||| ||| |||| ||| || || ||| ||| | | | || | | Sbjct 3421483 GATCTCTTCTACGCCCTCTGGATACCCGATCTTTTCATGAAACGCGTCGAGGCCAACGGG 3421424 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGA 262011 ||||||||||| | || ||| | | |||||||||||||| Sbjct 3421423 GACTGGTCGCTGATGTGTCCGCACAAATGCCCCGGCCTGCACGA 3421380 Score = 98.7 bits (108), Expect = 1e-14 Identities = 194/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 ||||| ||| ||| |||||| || |||| ||||| ||| || | ||| || | Sbjct 3421884 TGTCGGAGCGGTTCTTCACCCACGCCTCGCCAACGCTTTTTGCCGCAGCCACAAATCGGC 3421825 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 |||| ||||||||||| ||| || ||||| |||||| |||||||||||||||| Sbjct 3421824 CGCAACTGTCGTCGTGCTTCCTGCTGACCATGACGGCCGACTCGATCGAGGGCATCTTCA 3421765 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 | || | | |||||||| | ||||| || |||| || ||||| || | | | Sbjct 3421764 AGTCGGTGGAACAGTGCGCCATGATCTCGAAATCGGCAGGAGGCATTGGACTGAATGTCC 3421705 Query 260076 ACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTG 260135 | | || ||| |||| ||| | | ||||| || ||| ||||| ||||| | Sbjct 3421704 ATTGCATCCGGGCCAAGGGCACCTCCATCTGCGGCACGAATGGCACCTCCAATGGCCTGG 3421645 Query 260136 TGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | |||||||| | || || ||| | ||| || ||||| || ||| Sbjct 3421644 TACCCATGCTCAGGGTCTTCAACAATGTGGCACGTTACGTGGATCAG 3421598 Score = 86.0 bits (94), Expect = 9e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 263341 GGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTC 263400 ||||||||||| |||||||||||||||||||| ||| ||||| ||||| ||||| ||| Sbjct 3420271 GGCCTCAAGACCGGCATGTACTATCTGCGCACAAAGCCAGCTGCGAACGCGATTCAGTTC 3420212 Query 263401 ACCGTCGATCAG 263412 ||||| ||| || Sbjct 3420211 ACCGTGGATAAG 3420200 >seq5221 Length=5268673 Score = 89.7 bits (98), Expect = 7e-12 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 1817496 GCCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCACGTTCATGGTGTG 1817555 ||| |||| ||| ||||| |||||||||| | | ||| || | | | | ||| Sbjct 253437 GCCCATGACGGGTTTGTTCGCCTGCGGCGTGATGATCTGCCTGGGCGTGATGTGGATGTT 253378 Query 1817556 CGTCACCTCGGCGCGCGCGTCTCA--GACTGGGGCACATGGAGGTTCATCTCGTCGCCGT 1817613 | |||||||||||||| || || ||||| ||||| || || |||||||||||||||| Sbjct 253377 CTCCACCTCGGCGCGCGTCTC-CATGGACTGCGGCACGTGCAGATTCATCTCGTCGCCGT 253319 Query 1817614 CAAAGTCGGCATTGTAGG 1817631 | || ||||||||||||| Sbjct 253318 CGAAATCGGCATTGTAGG 253301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177287562971498