Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4172 131 2e-25 seq5375 129 5e-25 seq5277 122 8e-23 seq4488 118 1e-21 seq5214 95.1 1e-14 >seq4172 Length=1033301 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| || || |||||| || ||||| ||||||| |||||| || | || || Sbjct 907213 CACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTACGTCCATCTTC 907272 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || ||||| |||||||| || | |||| | |||||||||| Sbjct 907273 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTG 907332 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | | || ||| | || ||||||| ||||| || || Sbjct 907333 GATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTT 907392 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| ||| ||||| || |||||||| Sbjct 907393 GCCAGTCAGAGTCTTCACGAAGATCTGCAT 907422 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||| ||||||| ||| || || |||| ||||||||||| || || || Sbjct 907460 TCCTTCTGGATGTTATAATCGGACAAAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAA 907519 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| |||||||| || | |||| | |||||||||| |||||| ||||| | | Sbjct 907520 ATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 907579 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || ||| | || ||||||| ||||| || || || |||||||| ||||| Sbjct 907580 TCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACG 907639 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 907640 AAAATTTGCAT 907650 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || |||||||| || || ||||||||| |||||||| |||| | Sbjct 906968 CCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 907027 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || ||||| |||||||| || | || Sbjct 907028 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGG 907087 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||||| | | | || ||| | || ||| Sbjct 907088 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACC 907147 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || |||||||| || || || |||||||| Sbjct 907148 TCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||||| || || |||||| || |||||||| |||| | Sbjct 906740 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 906799 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || ||||| |||||||| || | || Sbjct 906800 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 906859 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||||| | | | | || ||| | || ||| Sbjct 906860 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACC 906919 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | ||| || ||||| |||||||| Sbjct 906920 TCCAAAGTGATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 906966 >seq5375 Length=646746 Score = 129 bits (142), Expect = 5e-25 Identities = 202/289 (70%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 44131 TGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTA 44190 |||||||| | || ||| || ||| |||| || || || |||||| | | |||| | Sbjct 627727 TGTGGAACTCGGCGCAACTGCAGCTGGTGCGCGAGGGCAAGATGCACGGCTTCTTGCGCA 627786 Query 44191 TGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCGTTCATG 44250 |||| ||| ||| ||||| | || ||| | | || || ||||| | | | Sbjct 627787 TGTACTGGGCCAAAAAGATTCTCGAATGGACCGCCACGCCGGAACTGGCGCTGGAGTACG 627846 Query 44251 CCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGGAT 44310 | ||| || |||||||||||||| | || || ||||| |||||||| ||||| || | Sbjct 627847 CGATCCTGCTAAACGACAAGTACAGCCTTGATGGACGCGATCCCAACGGCTACGTGGGCT 627906 Query 44311 GTATGTGGTCCATTTGCGGTGTCCACGACAGGGCGTGGCGAGAGCTACCCATCTACGGCA 44370 | ||||||||||| |||| |||||||| | || ||| |||| |||| | ||||| Sbjct 627907 GCATGTGGTCCATCGGCGGCGTCCACGATATGGGATGGAAGGAGCGCGCCATTTTCGGCA 627966 Query 44371 AAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGTAAA 44419 | || || ||||||||||| | || ||| | ||||| ||||| || Sbjct 627967 AGGTTCGGTACATGAACTATCAGGGCTGCCGGCGCAAGTTCGATGTGAA 628015 >seq5277 Length=7425378 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||||||||| || || || |||||| || ||||||||||| | | Sbjct 1193238 CCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGAC 1193179 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| |||||||| ||||| || | |||||||| || | || Sbjct 1193178 AACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGG 1193119 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| ||||| | | | || || | ||| ||| Sbjct 1193118 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACC 1193059 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || ||||||| || ||||| || |||||||| Sbjct 1193058 TCCAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012 Score = 113 bits (124), Expect = 4e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || |||||||||||||||| | || || | || || |||||||| || ||||| Sbjct 1192974 TCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAAG 1192915 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| |||||||| || | |||| || |||||||||| ||||| ||||| | | Sbjct 1192914 ATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTC 1192855 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||| ||| | || ||||||| || || || || || ||||| || |||||| Sbjct 1192854 TCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCACA 1192795 Query 35726 AATATCTGCATTCTG 35740 || ||||||||| || Sbjct 1192794 AAGATCTGCATTTTG 1192780 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || |||| | | |||||| || | || ||||| || ||||||||||||| Sbjct 1194380 TTCCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGG 1194321 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || || |||| |||| |||||| || ||||| ||||| ||||||||||| | | Sbjct 1194320 ACAGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGG 1194261 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | |||||||||| ||| || ||||| | | | | ||||| | |||| Sbjct 1194260 GAATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCA 1194201 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| || || || || || || | || ||||| || || ||||| Sbjct 1194200 CCTCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152 >seq4488 Length=533506 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| || | || ||| || | || || Sbjct 135514 CACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCCTC 135455 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || || || |||| |||||||| || | |||| || |||||||||| Sbjct 135454 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 135395 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||||| | | | | |||||| | |||||||||| ||||| || || Sbjct 135394 AATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTGATGGTCTT 135335 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | ||||||||||| |||||||| Sbjct 135334 GCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305 >seq5214 Length=3698012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||| || || || |||||| |||||||| || || | Sbjct 3523194 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 3523135 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| || || || |||| |||||||| || | |||| Sbjct 3523134 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 3523075 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || |||||| ||||| || | | || | | || || || ||| ||| Sbjct 3523074 ATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGACC 3523015 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | || || || || |||||||| Sbjct 3523014 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 3522968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450763008019320