Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq5078 86.0 8e-12 seq4424 86.0 8e-12 seq4241 82.4 9e-11 >seq5078 Length=1488007 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 18754 TGGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAA 18813 || || |||||||||||||||||||||||| ||||||||||| ||| |||| |||||| | Sbjct 1125975 TGCGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 1126034 Query 18814 GTCCCATCAATCCCG 18828 | ||| ||| || || Sbjct 1126035 GCCCCGTCACTCGCG 1126049 >seq4424 Length=98381 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 18754 TGGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAA 18813 || || |||||||||||||||||||||||| ||||||||||| ||| |||| |||||| | Sbjct 55369 TGCGGGTGTAGCTCAGTTGGTTAGAGCGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGA 55310 Query 18814 GTCCCATCAATCCCG 18828 | ||| ||| || || Sbjct 55309 GCCCCGTCACTCGCG 55295 >seq4241 Length=507456 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 154423 CGAATAGCTCAGAGGTAGAGCACCTCCTTTACACGGAGATTGTCGGGGGTTCGATCCCCT 154482 ||| |||||||| |||||||| ||| ||||||| ||||| ||||||||||||||||||| Sbjct 464635 CGATTAGCTCAGCGGTAGAGCGTCTCGTTTACACCGAGATGGTCGGGGGTTCGATCCCCT 464694 Query 154483 CTTCG 154487 | ||| Sbjct 464695 CATCG 464699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605968474673520