Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq5214 316 3e-81
seq5242 118 1e-21
>seq5214
Length=3698012
Score = 316 bits (350), Expect = 3e-81
Identities = 1195/1856 (64%), Gaps = 28/1856 (2%)
Strand=Plus/Plus
Query 68364 CTTATCCAATGTAAACTGAATGG-GTGAGGATGCGGGTTTTGTACGTAGATAGTACATAC 68422
|||||||| || |||||||| | || | | || || ||||| || ||||||||||| |
Sbjct 3420200 CTTATCCACGGTGAACTGAATCGCGTTCGCA-GCTGGCTTTGTGCGCAGATAGTACATGC 3420258
Query 68423 CGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTG 68482
|||| || || || |||| ||| || || || || |||||| || | |
Sbjct 3420259 CGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTTGCCGTAGTTCG 3420318
Query 68483 GATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCG 68542
| || || | |||||| || | ||| |||||||| |||||||| || || | |||||| |
Sbjct 3420319 GCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGATGAACGCACCACGATCTGCGG 3420378
Query 68543 CCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCT--TAAAAATCTGTTTGAT 68600
||||||| || | ||| | |||||||| | |||| |||| ||| ||
Sbjct 3420379 CCATTTTAATTGTGGACTTCACGGAGATTTCCCACACGGTCTTGTAAAGATC---GCGA- 3420434
Query 68601 ATCATCT--GGAA--GGCTC-GTATTTTGAATGGATCCACCATCGGATATAATTATATTC 68655
| | ||| |||| | ||| | || || || || || | ||| || || |||
Sbjct 3420435 ACCTTCTGGGGAATGGCCTCAATGTTCTGGATTGAACCCCTGCTGGAAATGATCTGGTTC 3420494
Query 68656 TTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACT 68715
|| || || || | |||||| | ||| ||||| | || | | ||| | || ||
Sbjct 3420495 TTCATATCGTCGTCCCACAAATCCAGCTCGGTTAAGTCCCTCAACAAATGATGGTTGACC 3420554
Query 68716 ATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 68775
| || ||||| || || | || | || |||||||| ||| | || || || || | |
Sbjct 3420555 ACCTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAAA 3420614
Query 68776 GATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAA 68835
||||| || || |||| ||||| ||||| ||||| || ||||| ||||| |||| |
Sbjct 3420615 GATTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCAACCAGCAGG 3420674
Query 68836 CTATTTCTAAGACCATG-TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATC 68894
|| || | ||| || || | |||| || || || | | ||||||||| || ||
Sbjct 3420675 GAGTTCCTGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAATCCCACAGGTC 3420733
Query 68895 AGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATT 68954
| || | ||| | ||||| || |||||||| || || | || |
Sbjct 3420734 CGTGGGCTTCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTC 3420793
Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014
|| |||||||| || ||||| | || || ||||| || || || || || |||||
Sbjct 3420794 GTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGCTGGCTTCCAAGGCGCCGTA 3420853
Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074
||||| |||||||| |||| || ||| | | ||||| || ||| |||| |
Sbjct 3420854 GTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCCTCGCTTTCGTATGGGAA 3420913
Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCT 69134
| | ||||| | || || || || ||||| || || || || | || | ||| ||
Sbjct 3420914 TCGCATGAGAATCAGGGCGTCAGCGAAACCCTGGACACCGATGCCCACCGGACGATGCCT 3420973
Query 69135 CTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAG 69194
| ||| || | | | ||||| | |||||| | || || || || || || || ||
Sbjct 3420974 CAAATTAGATTTCTTTGTCTCTGGCAGGGGATAAAAGTTGATGTCAATTATCTTGTTGAG 3421033
Query 69195 ATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCT-- 69252
||||| | || || || ||||| ||||| |||||| | ||| | |||
Sbjct 3421034 ATTTCTGGTAACCGTCTTGGTGACTTCCTTCAGTTTTTTGAAATCATA-CGT-CTTCTCG 3421091
Query 69253 ---ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309
| || ||||| || || || | ||||| || || || ||||| | ||| | |
Sbjct 3421092 GGCGTGACGAACATGTTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCGGC 3421151
Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369
| ||| | | || || || || | ||| || || ||||| || || | ||| |||
Sbjct 3421152 GCGGAATACTCAACGATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTGC 3421211
Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429
|| || ||||| |||| || | |||||| | || || ||||| | || ||||| | |
Sbjct 3421212 TGGTTGCTCTTCCTGTTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTCCACC 3421271
Query 69430 TGAGATTCGATAATAGATTTCCA-AACGACCCTAGCATTTA--TTACGGTCTTGTAACGC 69486
|| || || || || | ||| || ||| | || || | | ||| || |||
Sbjct 3421272 TGCGACTCAATGATGGCGAACCACAAGGACTGT-GCCTTGACCGTCCGG--TTCGCACGG 3421328
Query 69487 TTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546
||| | || ||||| || || ||| |||||| ||||| ||||| ||||| | ||
Sbjct 3421329 CCCTCCTGCTCGTATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTGCAGG 3421388
Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606
|| || |||| | |||||||||| ||||| | | | ||| || ||||||||
Sbjct 3421389 CCGGGGCATTTGTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTTCATG 3421448
Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666
|| |||||||| ||||| || || |||||||| | || | ||| || || || ||
Sbjct 3421449 AAAAGATCGGGTATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTTGCCG 3421508
Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726
|| || || || || || || ||||| | | || || ||||| || || || || ||
Sbjct 3421509 GTGTTCTTCTTGAGTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCCAGGTAAATG 3421568
Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786
|| | | | || || || || || |||||||| | ||| | || || || ||
Sbjct 3421569 GCGAAGGCACCGGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTTGAAG 3421628
Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846
|| || ||||| || | | ||||| || | ||||| || || | || | | ||
Sbjct 3421629 ACCCTGAGCATGGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGATGGAGGTGCCC 3421688
Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906
| || || || | | | || || || ||||||||| ||| ||||| | ||
Sbjct 3421689 TTGGCCCGGATGCAATGGACATTCAGTCCAATGCCTCCTGCCGATTTCGAGATCATGGCG 3421748
Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966
|| ||| || | | | || ||||| || || | ||||| | || || ||
Sbjct 3421749 CACTGTTCCACCGACTTGAAGATGCCCTCGATCGAGTCGGCCGTCATGGTCAGCAGGAAG 3421808
Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026
|| |||| ||| | | | || | || ||| | || || || ||||| |||
Sbjct 3421809 CACGACGACAGTTGCGGCCGATTTGTGGCTGCGGCAAAAAGCGTTGGCGAGGCGTGGGTG 3421868
Query 70027 AACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGA 70086
|| | || || ||||| ||||| || || | || | || || ||| |||
Sbjct 3421869 AAGAACCGCTCCGACAGCAGGTTGTAGGTCTCCACGGCCGCATCGATGTCCTCTCCATGG 3421928
Query 70087 ATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATT 70146
||||| ||||| || ||||||| ||| ||||| || || || | | || ||| |
Sbjct 3421929 ATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGACGCTCGGCGATCTTTCCGTTTCTC 3421988
Query 70147 TTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202
|||| |||||| || ||| || |||||||| ||||| |||||||| ||||||
Sbjct 3421989 TTCAGCAGGTACGAACGTTCGAGGGTTTTAAAACCAAAGTAGTTGTACCCAAAGTC 3422044
>seq5242
Length=5320397
Score = 118 bits (130), Expect = 1e-21
Identities = 463/721 (64%), Gaps = 9/721 (1%)
Strand=Plus/Plus
Query 39329 TGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 39388
||||| || || || |||||||| ||||| || ||||| |||| || || | |||
Sbjct 3387692 TGGTACTCGCCCACCTTCTTCTCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTCC 3387751
Query 39389 ATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAAT 39448
||||| | ||||| || | | || || | || || || || || | |||
Sbjct 3387752 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATCTTGCCAACGCCCAACTCCACCAGCAAG 3387811
Query 39449 CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 39508
| ||| || ||||| || ||||| ||||| ||||| ||||| || ||||| ||
Sbjct 3387812 CGATCCGCCACAAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCCGATGAGGTTC 3387871
Query 39509 ACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC--G 39566
|| || || || || || || ||||| | || ||| || || || || ||| |
Sbjct 3387872 ACAGGCAGGGCGTCTGTGAGGAACTCCTGCTCAATGAGCACCGCATCGCGGATGATCTCG 3387931
Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCA-GGCGAAG 39625
||| | | | | || | ||| | |||| | || | ||||| | ||| |||||||
Sbjct 3387932 ATGATGCGCTCGCGTC--TGGGTCGCTGCACCAGGTGCTGGAACATCA-GCACGGCGAAG 3387988
Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685
||||| || | ||||| || | || | ||||| || || || ||||| |||||
Sbjct 3387989 TCACAGTGCAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATC 3388048
Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745
||||| ||||| || ||||| || |||| || || || ||||||||||| ||
Sbjct 3388049 AGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCC 3388108
Query 39746 ACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT--ATG-TATCCACTTC 39802
|| || |||||||| | | | ||| ||| || | | || | | ||||| |
Sbjct 3388109 ACGGCGGCAAATGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGAGGAGATCCAGGAC 3388168
Query 39803 TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAA 39862
| ||||| ||||| || ||| || ||||| || || || || || || || ||
Sbjct 3388169 AGAGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTCTCGATGGCGTTGAACAGGTAC 3388228
Query 39863 TGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGG 39922
| | | ||| | || || || || | || || ||||| || || ||
Sbjct 3388229 TCCCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACGCTGTACATCTCCGAGTGC 3388288
Query 39923 ATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982
| ||| || || || ||||| || ||||| || || | || || || || || |||||
Sbjct 3388289 ACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCCGTGATCTGCACCTCC 3388348
Query 39983 GAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCC 40042
| || | ||| ||| || ||||| || || ||||| |||||||| || |||
Sbjct 3388349 TGGCTGAACCGCTCCACCAGGTTCTCATTGACGATGCCATCGGAGGCGGCAAAGAAGGCC 3388408
Query 40043 A 40043
|
Sbjct 3388409 A 3388409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686862184651560
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