Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5214 316 3e-81 seq5242 118 1e-21 >seq5214 Length=3698012 Score = 316 bits (350), Expect = 3e-81 Identities = 1195/1856 (64%), Gaps = 28/1856 (2%) Strand=Plus/Plus Query 68364 CTTATCCAATGTAAACTGAATGG-GTGAGGATGCGGGTTTTGTACGTAGATAGTACATAC 68422 |||||||| || |||||||| | || | | || || ||||| || ||||||||||| | Sbjct 3420200 CTTATCCACGGTGAACTGAATCGCGTTCGCA-GCTGGCTTTGTGCGCAGATAGTACATGC 3420258 Query 68423 CGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTG 68482 |||| || || || |||| ||| || || || || |||||| || | | Sbjct 3420259 CGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTTGCCGTAGTTCG 3420318 Query 68483 GATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCG 68542 | || || | |||||| || | ||| |||||||| |||||||| || || | |||||| | Sbjct 3420319 GCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGATGAACGCACCACGATCTGCGG 3420378 Query 68543 CCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCT--TAAAAATCTGTTTGAT 68600 ||||||| || | ||| | |||||||| | |||| |||| ||| || Sbjct 3420379 CCATTTTAATTGTGGACTTCACGGAGATTTCCCACACGGTCTTGTAAAGATC---GCGA- 3420434 Query 68601 ATCATCT--GGAA--GGCTC-GTATTTTGAATGGATCCACCATCGGATATAATTATATTC 68655 | | ||| |||| | ||| | || || || || || | ||| || || ||| Sbjct 3420435 ACCTTCTGGGGAATGGCCTCAATGTTCTGGATTGAACCCCTGCTGGAAATGATCTGGTTC 3420494 Query 68656 TTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACT 68715 || || || || | |||||| | ||| ||||| | || | | ||| | || || Sbjct 3420495 TTCATATCGTCGTCCCACAAATCCAGCTCGGTTAAGTCCCTCAACAAATGATGGTTGACC 3420554 Query 68716 ATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 68775 | || ||||| || || | || | || |||||||| ||| | || || || || | | Sbjct 3420555 ACCTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAAA 3420614 Query 68776 GATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAA 68835 ||||| || || |||| ||||| ||||| ||||| || ||||| ||||| |||| | Sbjct 3420615 GATTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCAACCAGCAGG 3420674 Query 68836 CTATTTCTAAGACCATG-TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATC 68894 || || | ||| || || | |||| || || || | | ||||||||| || || Sbjct 3420675 GAGTTCCTGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAATCCCACAGGTC 3420733 Query 68895 AGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATT 68954 | || | ||| | ||||| || |||||||| || || | || | Sbjct 3420734 CGTGGGCTTCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTC 3420793 Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 || |||||||| || ||||| | || || ||||| || || || || || ||||| Sbjct 3420794 GTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGCTGGCTTCCAAGGCGCCGTA 3420853 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||||| |||||||| |||| || ||| | | ||||| || ||| |||| | Sbjct 3420854 GTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCCTCGCTTTCGTATGGGAA 3420913 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCT 69134 | | ||||| | || || || || ||||| || || || || | || | ||| || Sbjct 3420914 TCGCATGAGAATCAGGGCGTCAGCGAAACCCTGGACACCGATGCCCACCGGACGATGCCT 3420973 Query 69135 CTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAG 69194 | ||| || | | | ||||| | |||||| | || || || || || || || || Sbjct 3420974 CAAATTAGATTTCTTTGTCTCTGGCAGGGGATAAAAGTTGATGTCAATTATCTTGTTGAG 3421033 Query 69195 ATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCT-- 69252 ||||| | || || || ||||| ||||| |||||| | ||| | ||| Sbjct 3421034 ATTTCTGGTAACCGTCTTGGTGACTTCCTTCAGTTTTTTGAAATCATA-CGT-CTTCTCG 3421091 Query 69253 ---ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | || ||||| || || || | ||||| || || || ||||| | ||| | | Sbjct 3421092 GGCGTGACGAACATGTTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCGGC 3421151 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 | ||| | | || || || || | ||| || || ||||| || || | ||| ||| Sbjct 3421152 GCGGAATACTCAACGATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTGC 3421211 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 || || ||||| |||| || | |||||| | || || ||||| | || ||||| | | Sbjct 3421212 TGGTTGCTCTTCCTGTTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTCCACC 3421271 Query 69430 TGAGATTCGATAATAGATTTCCA-AACGACCCTAGCATTTA--TTACGGTCTTGTAACGC 69486 || || || || || | ||| || ||| | || || | | ||| || ||| Sbjct 3421272 TGCGACTCAATGATGGCGAACCACAAGGACTGT-GCCTTGACCGTCCGG--TTCGCACGG 3421328 Query 69487 TTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 ||| | || ||||| || || ||| |||||| ||||| ||||| ||||| | || Sbjct 3421329 CCCTCCTGCTCGTATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTGCAGG 3421388 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 || || |||| | |||||||||| ||||| | | | ||| || |||||||| Sbjct 3421389 CCGGGGCATTTGTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTTCATG 3421448 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 || |||||||| ||||| || || |||||||| | || | ||| || || || || Sbjct 3421449 AAAAGATCGGGTATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTTGCCG 3421508 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 || || || || || || || ||||| | | || || ||||| || || || || || Sbjct 3421509 GTGTTCTTCTTGAGTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCCAGGTAAATG 3421568 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | | | || || || || || |||||||| | ||| | || || || || Sbjct 3421569 GCGAAGGCACCGGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTTGAAG 3421628 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || || ||||| || | | ||||| || | ||||| || || | || | | || Sbjct 3421629 ACCCTGAGCATGGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGATGGAGGTGCCC 3421688 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 | || || || | | | || || || ||||||||| ||| ||||| | || Sbjct 3421689 TTGGCCCGGATGCAATGGACATTCAGTCCAATGCCTCCTGCCGATTTCGAGATCATGGCG 3421748 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || ||| || | | | || ||||| || || | ||||| | || || || Sbjct 3421749 CACTGTTCCACCGACTTGAAGATGCCCTCGATCGAGTCGGCCGTCATGGTCAGCAGGAAG 3421808 Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026 || |||| ||| | | | || | || ||| | || || || ||||| ||| Sbjct 3421809 CACGACGACAGTTGCGGCCGATTTGTGGCTGCGGCAAAAAGCGTTGGCGAGGCGTGGGTG 3421868 Query 70027 AACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGA 70086 || | || || ||||| ||||| || || | || | || || ||| ||| Sbjct 3421869 AAGAACCGCTCCGACAGCAGGTTGTAGGTCTCCACGGCCGCATCGATGTCCTCTCCATGG 3421928 Query 70087 ATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATT 70146 ||||| ||||| || ||||||| ||| ||||| || || || | | || ||| | Sbjct 3421929 ATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGACGCTCGGCGATCTTTCCGTTTCTC 3421988 Query 70147 TTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 |||| |||||| || ||| || |||||||| ||||| |||||||| |||||| Sbjct 3421989 TTCAGCAGGTACGAACGTTCGAGGGTTTTAAAACCAAAGTAGTTGTACCCAAAGTC 3422044 >seq5242 Length=5320397 Score = 118 bits (130), Expect = 1e-21 Identities = 463/721 (64%), Gaps = 9/721 (1%) Strand=Plus/Plus Query 39329 TGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 39388 ||||| || || || |||||||| ||||| || ||||| |||| || || | ||| Sbjct 3387692 TGGTACTCGCCCACCTTCTTCTCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTCC 3387751 Query 39389 ATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAAT 39448 ||||| | ||||| || | | || || | || || || || || | ||| Sbjct 3387752 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATCTTGCCAACGCCCAACTCCACCAGCAAG 3387811 Query 39449 CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 39508 | ||| || ||||| || ||||| ||||| ||||| ||||| || ||||| || Sbjct 3387812 CGATCCGCCACAAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCCGATGAGGTTC 3387871 Query 39509 ACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC--G 39566 || || || || || || || ||||| | || ||| || || || || ||| | Sbjct 3387872 ACAGGCAGGGCGTCTGTGAGGAACTCCTGCTCAATGAGCACCGCATCGCGGATGATCTCG 3387931 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCA-GGCGAAG 39625 ||| | | | | || | ||| | |||| | || | ||||| | ||| ||||||| Sbjct 3387932 ATGATGCGCTCGCGTC--TGGGTCGCTGCACCAGGTGCTGGAACATCA-GCACGGCGAAG 3387988 Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685 ||||| || | ||||| || | || | ||||| || || || ||||| ||||| Sbjct 3387989 TCACAGTGCAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATC 3388048 Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745 ||||| ||||| || ||||| || |||| || || || ||||||||||| || Sbjct 3388049 AGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCC 3388108 Query 39746 ACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT--ATG-TATCCACTTC 39802 || || |||||||| | | | ||| ||| || | | || | | ||||| | Sbjct 3388109 ACGGCGGCAAATGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGAGGAGATCCAGGAC 3388168 Query 39803 TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAA 39862 | ||||| ||||| || ||| || ||||| || || || || || || || || Sbjct 3388169 AGAGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTCTCGATGGCGTTGAACAGGTAC 3388228 Query 39863 TGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGG 39922 | | | ||| | || || || || | || || ||||| || || || Sbjct 3388229 TCCCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACGCTGTACATCTCCGAGTGC 3388288 Query 39923 ATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 | ||| || || || ||||| || ||||| || || | || || || || || ||||| Sbjct 3388289 ACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCCGTGATCTGCACCTCC 3388348 Query 39983 GAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCC 40042 | || | ||| ||| || ||||| || || ||||| |||||||| || ||| Sbjct 3388349 TGGCTGAACCGCTCCACCAGGTTCTCATTGACGATGCCATCGGAGGCGGCAAAGAAGGCC 3388408 Query 40043 A 40043 | Sbjct 3388409 A 3388409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686862184651560